PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11485_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25708.2 Da PI: 4.2261 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.4 | 1.3e-11 | 64 | 93 | 22 | 51 |
HHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeyss 51 KA+ELS+LCd+ v+ +i s++g+ ++++ cra_locus_11485_iso_1_len_842_ver_3 64 RKAKELSILCDIPVCAVITSPNGETETWPT 93 5***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 1.6E-7 | 64 | 91 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-9 | 64 | 108 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
RPGGIDFYFG KNFKESDQIN SSRKGEERGD NKIFAFCVEL CVIIWSXXXX XXXXXXXXXX 60 XXXRKAKELS ILCDIPVCAV ITSPNGETET WPTSLSELKP IFQMYREKIQ FFDRQGYGDP 120 AEDNYGKGTD EIMLFDHDPA DENYDQETEE DDEDEIMEWL NDKILAVNDR IRVLKEIDVK 180 KLPWRSGSVT EFQSDCTCLS SSSAHSAQTN GAESISIGRE SHFSD |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3723 | 16 | 39 |