PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11392_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Dof

Protein Properties

Length: 348aa MW: 37791.6 Da PI: 8.6525

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11392_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.7e-39	55	115	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ + cra_locus_11392_iso_2_len_1257_ver_3 55 QQQPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIK 115 6899******************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.3E-33	57	113	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	59	113	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-28	59	113	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	61	97	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
SERVVEKKEM LGNCEKKNEW AANQIDEKGL IMAASSSANK VLLMEKTAAQ DQNQQQQPLK 60 CPRCDSSNTK FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRK NKRIKRPSSS 120 SSTNTNTTTE VNVTSSIITN PSSSNIQTGH IDLSSSSSSA AGHINPLFYS LFTNPSDMNL 180 PYPRFNSSSG GFDSQMNGIN NGLGFSSGLL ASDVSSHEFH RSNGFLSSYP INIGSNSSST 240 STMASLLASS LHQQKLISPG NNNNNYQQQF GGANYEELAA ARNGNVKMEE NSWNVPNHHQ 300 NHNIEVQMVN SSSDANNSLL WNAANGIGAV ANWLDPNSNI GSSVTSLI

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

SERVVEKKEM LGNCEKKNEW AANQIDEKGL IMAASSSANK VLLMEKTAAQ DQNQQQQPLK  60
CPRCDSSNTK FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRK NKRIKRPSSS  120
SSTNTNTTTE VNVTSSIITN PSSSNIQTGH IDLSSSSSSA AGHINPLFYS LFTNPSDMNL  180
PYPRFNSSSG GFDSQMNGIN NGLGFSSGLL ASDVSSHEFH RSNGFLSSYP INIGSNSSST  240
STMASLLASS LHQQKLISPG NNNNNYQQQF GGANYEELAA ARNGNVKMEE NSWNVPNHHQ  300
NHNIEVQMVN SSSDANNSLL WNAANGIGAV ANWLDPNSNI GSSVTSLI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027105310.1	9e-88	dof zinc finger protein DOF1.4-like
TrEMBL	A0A068TVZ0	2e-83	A0A068TVZ0_COFCA; Uncharacterized protein
STRING	EOY28202	1e-80	(Theobroma cacao)