PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11392_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Dof

Protein Properties

Length: 349aa MW: 37910.4 Da PI: 8.6525

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11392_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	56	116	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ + cra_locus_11392_iso_1_len_1258_ver_3 56 QQQPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIK 116 6899******************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.3E-33	58	114	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-28	60	114	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	60	114	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	62	98	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
XSERVVEKKE MLGNCEKKNE WAANQIDEKG LIMAASSSAN KVLLMEKTAA QDQNQQQQPL 60 KCPRCDSSNT KFCYYNNYSL SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR KNKRIKRPSS 120 SSSTNTNTTT EVNVTSSIIT NPSSSNIQTG HIDLSSSSSS AAGHINPLFY SLFTNPSDMN 180 LPYPRFNSSS GGFDSQMNGI NNGLGFSSGL LASDVSSHEF HRSNGFLSSY PINIGSNSSS 240 TSTMASLLAS SLHQQKLISP GNNNNNYQQQ FGGANYEELA AARNGNVKME ENSWNVPNHH 300 QNHNIEVQMV NSSSDANNSL LWNAANGIGA VANWLDPNSN IGSSVTSLI

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

XSERVVEKKE MLGNCEKKNE WAANQIDEKG LIMAASSSAN KVLLMEKTAA QDQNQQQQPL  60
KCPRCDSSNT KFCYYNNYSL SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR KNKRIKRPSS  120
SSSTNTNTTT EVNVTSSIIT NPSSSNIQTG HIDLSSSSSS AAGHINPLFY SLFTNPSDMN  180
LPYPRFNSSS GGFDSQMNGI NNGLGFSSGL LASDVSSHEF HRSNGFLSSY PINIGSNSSS  240
TSTMASLLAS SLHQQKLISP GNNNNNYQQQ FGGANYEELA AARNGNVKME ENSWNVPNHH  300
QNHNIEVQMV NSSSDANNSL LWNAANGIGA VANWLDPNSN IGSSVTSLI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027105310.1	1e-87	dof zinc finger protein DOF1.4-like
TrEMBL	A0A068TVZ0	2e-83	A0A068TVZ0_COFCA; Uncharacterized protein
STRING	EOY28202	1e-80	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419