PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11362_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 143aa MW: 15817.7 Da PI: 6.4882

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11362_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.9	7e-13	53	77	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG+C yG+rC+F+H++ cra_locus_11362_iso_5_len_587_ver_3 53 QADCMYYLRTGFCGYGSRCRFNHPR 77 789********************96 PP
2	zf-CCCH	40.8	3.7e-13	99	123	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ cra_locus_11362_iso_5_len_587_ver_3 99 QPVCQYYMRTGMCKFGASCKYNHPR 123 689********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	4.6E-6	50	77	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.53	50	78	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-7	51	79	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-10	53	77	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-6	56	77	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.525	96	124	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.7E-6	96	123	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.53E-7	97	123	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.2E-10	99	123	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.0E-6	101	123	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MERYSGTQAM EGAAAADPVA EWTAPSGETG LEEPMWQLGL GGGPDTYPER PEQADCMYYL 60 RTGFCGYGSR CRFNHPRDRS AVMGAMRVTG GEYPERVDQP VCQYYMRTGM CKFGASCKYN 120 HPRQGGGSPS PVTFNIYGYP MRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009588295.1	2e-82	PREDICTED: zinc finger CCCH domain-containing protein 58
Refseq	XP_016434969.1	2e-82	PREDICTED: zinc finger CCCH domain-containing protein 58-like
Swissprot	Q6NPN3	1e-53	C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
Swissprot	Q9SQU4	9e-54	C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBL	A0A1S3X4X9	4e-81	A0A1S3X4X9_TOBAC; zinc finger CCCH domain-containing protein 58-like
STRING	XP_009588295.1	6e-82	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]