PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11318_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 303aa MW: 34017.9 Da PI: 6.7968

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11318_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.9	3.5e-11	189	233	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 kr +r NR +A+rsR RK+++i eLe+ v +L+ae + L ++ cra_locus_11318_iso_1_len_1098_ver_3 189 KRIKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRV 233 899*********************************988776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.7E-13	185	249	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.599	187	239	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.85E-11	189	243	No hit	No description
Pfam	PF00170	1.2E-9	189	232	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.6E-13	189	240	No hit	No description
CDD	cd14703	1.21E-21	190	240	No hit	No description
PROSITE pattern	PS00036	0	192	207	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MAQLPPKVPN MMPNWADFPH QKLLAPIEIL GGNISTNHNQ SSWVDEFLDF SSAKRGSHRR 60 SISDSIAFLE VPLVEECRRS SIPGGGGGGA GTGTTTASEF DKFDDEQLMS MFTDEIANSG 120 GQNSNPSSPS DHNSINDDKQ NPDLQMQQQM MKTEPDEVES SCKSDLQFAA CAAQNGTSDI 180 SNEKIFDPKR IKRILANRQS AQRSRVRKLQ YISELERSVT SLQAEVSVLS PRVAFLDHQR 240 LVLNVDNSVL KQRIAALAQD KIFKDAHQEA LKREIERLRQ IYYQQNLKKM ENATPPLLWR 300 RSX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027172353.1	1e-155	basic leucine zipper 61-like
Refseq	XP_027172358.1	1e-155	basic leucine zipper 61-like
Swissprot	Q9M2K4	1e-106	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A068V5U8	1e-153	A0A068V5U8_COFCA; Uncharacterized protein
STRING	XP_009629315.1	1e-138	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]