PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1130_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 328aa MW: 38167.7 Da PI: 4.4335

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1130_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.8	1.6e-14	83	168	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtse 74 W ++e +L+e+ e+ +l+r++l++ +W+ev++k+ + g e+s qC++ ++ l+k+ykk+++ ++k + cra_locus_1130_iso_4_len_1694_ver_3 83 WNEEESFVLLEVWGERYLELGRRSLRAEDWSEVAEKVsEMSGTEKSEMQCRNQLDVLKKKYKKERAKSEKIGGG 156 ***********************************555799*************************99 PP trihelix 75 ssstcpyfdqle 86 s++++f++++ cra_locus_1130_iso_4_len_1694_ver_3 157 FASKWVFFKKMD 168 ***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.8E-20	80	169	No hit	No description
PROSITE profile	PS51029	8.566	83	175	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
KAQFQNDKAF QQDDDELDDA EDNPVFNRAQ NEYHYNSYYD DEPKNNKKRR KMESLPSTYE 60 FAPRAGMNLP KSSHAGGSSR ESWNEEESFV LLEVWGERYL ELGRRSLRAE DWSEVAEKVS 120 EMSGTEKSEM QCRNQLDVLK KKYKKERAKS EKIGGGFASK WVFFKKMDVL LNLRMRGHCG 180 LGCGLDSGEY VFMNPRVYLD KSNVLDEMRD SPGQSDDENE EDEGFGGHED EKHGESARLL 240 ADSIQRFGEI YEKIESSKRK QMMELEKMRR DFQRDLELQK KQIVERAQAE IAKIRERDDD 300 LEDGDEEDDD NDDDDNDNGD VPDANTRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	50	KKRRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065252.1	1e-159	trihelix transcription factor ASIL1-like
Refseq	XP_027065253.1	1e-159	trihelix transcription factor ASIL1-like
TrEMBL	A0A068U4W7	1e-158	A0A068U4W7_COFCA; Uncharacterized protein
STRING	XP_009783625.1	1e-121	(Nicotiana sylvestris)