PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_112_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB
Protein Properties Length: 299aa    MW: 32889.7 Da    PI: 6.7859
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_112_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-18552148
                                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                        +g+WT+eEde+l++++k+ G g+W++ ++  g+ R++k+c++rw +yl
  cra_locus_112_iso_7_len_1241_ver_3  5 KGPWTPEEDEKLIQYIKENGHGSWRSLPKSAGLLRCGKSCRLRWTNYL 52
                                        79******************************99************97 PP
2Myb_DNA-binding53.36.5e-1758103148
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                         rg++T+eE++l +++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
  cra_locus_112_iso_7_len_1241_ver_3  58 RGPFTPEEEKLVIQLHAILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 103
                                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.7E-31199IPR009057Homeodomain-like
PROSITE profilePS5129426.542156IPR017930Myb domain
SMARTSM007171.7E-14454IPR001005SANT/Myb domain
PfamPF002491.0E-16552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-24659IPR009057Homeodomain-like
CDDcd001674.80E-12752No hitNo description
PROSITE profilePS5129421.30557107IPR017930Myb domain
SMARTSM007177.3E-1657105IPR001005SANT/Myb domain
PfamPF002495.7E-1658103IPR001005SANT/Myb domain
CDDcd001672.20E-1260103No hitNo description
Gene3DG3DSA:1.10.10.604.4E-2760108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGLKKGPWTP EEDEKLIQYI KENGHGSWRS LPKSAGLLRC GKSCRLRWTN YLRPDIKRGP  60
FTPEEEKLVI QLHAILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLICM GIDPQTHEPS  120
SSPSGLLKRL PASPSTRHMA QWESARLEAE ARLSRESSFS IPSSTGNFNS DYILRLWNSE  180
IGESFRNFNI KGNKIGRNNS SISLASSSTK CESVSVTAPE GGVLGLAGAS AAGSNQTEDP  240
DCRSSISPLA DVHHGSDSAG SDDLEDSSES TLQLLLDFPN NNDMSFLGHC DHDNMYSLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-3031075108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108321.11e-152transcription factor MYB41-like isoform X1
RefseqXP_027115148.11e-152transcription factor MYB41-like isoform X1
RefseqXP_027161867.11e-152transcription factor MYB41 isoform X1
SwissprotQ9M2D91e-112MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A068UKS71e-151A0A068UKS7_COFCA; Uncharacterized protein
STRINGSolyc01g094360.2.11e-139(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154