PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_112_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB

Protein Properties

Length: 295aa MW: 32347.3 Da PI: 7.5418

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_112_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	5.9e-18	5	52	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++k+ G g+W++ ++ g+ R++k+c++rw +yl cra_locus_112_iso_5_len_2103_ver_3 5 KGPWTPEEDEKLIQYIKENGHGSWRSLPKSAGLLRCGKSCRLRWTNYL 52 79****************************99**********97 PP
2	Myb_DNA-binding	53.3	6.4e-17	58	103	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++l +++++ lG++ W++Ia+ ++ gRt++++k+ w+++l cra_locus_112_iso_5_len_2103_ver_3 58 RGPFTPEEEKLVIQLHAILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 103 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.62E-31	1	99	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.542	1	56	IPR017930	Myb domain
SMART	SM00717	1.7E-14	4	54	IPR001005	SANT/Myb domain
Pfam	PF00249	9.8E-17	5	52	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.2E-24	6	59	IPR009057	Homeodomain-like
CDD	cd00167	9.82E-12	7	52	No hit	No description
PROSITE profile	PS51294	21.305	57	107	IPR017930	Myb domain
SMART	SM00717	7.3E-16	57	105	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-16	58	103	IPR001005	SANT/Myb domain
CDD	cd00167	4.65E-12	60	103	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.3E-27	60	108	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0009909	Biological Process	regulation of flower development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MGLKKGPWTP EEDEKLIQYI KENGHGSWRS LPKSAGLLRC GKSCRLRWTN YLRPDIKRGP 60 FTPEEEKLVI QLHAILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLICM GIDPQTHEPS 120 SSPSGLLKRL PASPSTRHMA QWESARLEAE ARLSRESSFS IPSSTGNFNS DYILRLWNSE 180 IGESFRNFNI KGNKIGRNNS SISLASSSTK CESVSVTAPE GGVLGLAGAS AAGSNQTEDP 240 DCRSSISPLA DVHHGSDSAG SDDLEDSSES TLQLLLDFPV AVWQILASIT QILGW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-30	3	107	5	108	B-MYB
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269\|PubMed:19232308, ECO:0000269\|PubMed:21750030}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00114	ampDAP	Transfer from AT3G61250	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027108321.1	1e-145	transcription factor MYB41-like isoform X1
Refseq	XP_027115148.1	1e-145	transcription factor MYB41-like isoform X1
Refseq	XP_027161867.1	1e-145	transcription factor MYB41 isoform X1
Swissprot	Q9M2D9	1e-109	MYB17_ARATH; Transcription factor MYB17
TrEMBL	A0A068UKS7	1e-144	A0A068UKS7_COFCA; Uncharacterized protein
STRING	cassava4.1_012556m	1e-129	(Manihot esculenta)