PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11294_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 132aa MW: 15370.4 Da PI: 10.7132

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11294_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.8	4.8e-08	13	58	18	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +rsR RK+++i+eLe+ v+ L++ ++L+ ++ +l ++ +l e+ cra_locus_11294_iso_4_len_726_ver_3 13 QRSRVRKLQYIAELERTVDILQKFESDLAARVGSLFQQRLALSVEN 58 79*********************************99998888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14703	1.13E-10	2	51	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.2E-6	13	68	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
XAERMPVKRH PGQRSRVRKL QYIAELERTV DILQKFESDL AARVGSLFQQ RLALSVENNK 60 LKQKVVKLQQ QKIIADGQYQ SLRKEVERLK TSLAYSSRKD KVSTNFRLST TIEMANSEAN 120 WQNLDLENLH LN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027160417.1	4e-53	basic leucine zipper 61
Refseq	XP_027160419.1	4e-53	basic leucine zipper 61
Refseq	XP_027160420.1	4e-53	basic leucine zipper 61
Swissprot	Q5JMK6	9e-19	BZP06_ORYSJ; Basic leucine zipper 6
TrEMBL	A0A068TUK6	2e-51	A0A068TUK6_COFCA; Uncharacterized protein
STRING	Solyc11g006490.1.1	1e-47	(Solanum lycopersicum)
STRING	PGSC0003DMT400005064	1e-47	(Solanum tuberosum)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]