PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11246_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HB-PHD | ||||||||
Protein Properties | Length: 814aa MW: 90139.7 Da PI: 4.9944 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.5 | 3.9e-07 | 610 | 646 | 9 | 45 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVk 45 + +++L e F++n+yp+++ ++ LAk+lgL +qV cra_locus_11246_iso_5_len_2926_ver_3 610 EAVVQRLVESFKENQYPKQDVKQSLAKELGLRVQQVH 646 567899*****************************96 PP | |||||||
2 | PHD | 38 | 3.8e-13 | 241 | 296 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ + e++++lCdg C++ fH+ Cl+++l +e++p + wlC+ C++k cra_locus_11246_iso_5_len_2926_ver_3 241 FCAKCGSkdLTIENDIILCDGaCERGFHQFCLDPPLLKEDIPPDdeGWLCPGCDCK 296 699***955445********66*******************99999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 7.31E-14 | 231 | 299 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 5.1E-13 | 237 | 296 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.994 | 239 | 296 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 1.7E-9 | 241 | 294 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15504 | 1.98E-26 | 241 | 293 | No hit | No description |
Pfam | PF00628 | 1.3E-10 | 241 | 296 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 242 | 293 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 3.0E-10 | 575 | 646 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.42E-5 | 595 | 646 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-4 | 609 | 646 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.00102 | 613 | 645 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-10 | 679 | 690 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 814 aa Download sequence Send to blast |
XEHSNGEQIV ISNKDPISNS IPGDFRLPHE NGAAICAPEN MGSATCAPEN MGSATCDAHE 60 NHLDLQHSEP AEKDATNVAS ESVPHEGTSL PSRKQISSLL PPVSNRVLRS RSQEKPKASE 120 SKAVEVENSA NEGRKSKQRK GRMKKIPVNE FSRIRTHLRY LLHRVKYERN LIDAYSCEGW 180 KGQSLEKLKP EKELQRARSQ IFRYKLKIRD LFQQLDRSLT EGRFPESLFD SEGQIDSEDI 240 FCAKCGSKDL TIENDIILCD GACERGFHQF CLDPPLLKED IPPDDEGWLC PGCDCKLDCV 300 GMLNDFQEST LSVTDNWEKV FPEEAAAAAS GKTMDEGTGL PSDDSEDDDY NPDDPGLDHE 360 VSRGESTSDG SDYFSASDDI VPPLDNKQIF SPPSDDSEDD EYDPDAPDDD QQEKEESSSS 420 DFTSDSEDLG AILEDGESPN KDEGHFPSVS EDSKPNAVAS GEKLKAGKRK GRSLNDELSY 480 LTESNTEAVS GKRRGERLDY KKLHDEAYRN ATSDSSDEDY TETAGAKRRK SNAGKAIRIC 540 TNKIQDRNDR TDTMDGNQNH KENDHSVEGK SHKKLKVEGS NSISSESQKS TSEVGSSGKD 600 AAKQYKRLGE AVVQRLVESF KENQYPKQDV KQSLAKELGL RVQQVHLFSA FAVGLRVIIP 660 FCINICSLNT FTYLYSGGKW FENARWSFRH SSRMESKMVA AASTNGSSLR TRVHVMSLAA 720 KQSPVLPSPS DSGMENLISS QVRPGNEECQ ITDAGEGKSV ESEASGEKST RKRKVDNQGS 780 GAGNCMKQDQ HDDTPKSQGV RQRDRIQRRG RKSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027106044.1 | 0.0 | pathogenesis-related homeodomain protein isoform X1 | ||||
Refseq | XP_027106045.1 | 0.0 | pathogenesis-related homeodomain protein isoform X2 | ||||
Refseq | XP_027106046.1 | 0.0 | pathogenesis-related homeodomain protein isoform X2 | ||||
Swissprot | P48786 | 1e-135 | PRH_PETCR; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A068TM20 | 0.0 | A0A068TM20_COFCA; Uncharacterized protein | ||||
STRING | XP_009775281.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7220 | 21 | 26 |