PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11246_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HB-other

Protein Properties

Length: 521aa MW: 57131.8 Da PI: 4.5717

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11246_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.4	4.3e-12	349	396	9	56
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++L e F++n+yp+++ ++ LAk+lgL +qV WF N R + cra_locus_11246_iso_3_len_2047_ver_3 349 EAVVQRLVESFKENQYPKQDVKQSLAKELGLRVQQVGKWFENARWSFR 396 567899**************************************8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-13	326	392	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.843	338	398	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.25E-11	340	403	IPR009057	Homeodomain-like
SMART	SM00389	3.6E-8	340	402	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-9	348	396	IPR001356	Homeobox domain
CDD	cd00086	4.78E-9	352	399	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
SMLNCVGFQS PFVLLSWCAV PPDDEGWLCP GCDCKLDCVG MLNDFQESTL SVTDNWEKVF 60 PEEAAAAASG KTMDEGTGLP SDDSEDDDYN PDDPGLDHEV SRGESTSDGS DYFSASDDIV 120 PPLDNKQIFS PPSDDSEDDE YDPDAPDDDQ QEKEESSSSD FTSDSEDLGA ILEDGESPNK 180 DEGHFPSVSE DSKPNAVASG EKLKAGKRKG RSLNDELSYL TESNTEAVSG KRRGERLDYK 240 KLHDEAYRNA TSDSSDEDYT ETAGAKRRKS NAGKAIRICT NKIQDRNDRT DTMDGNQNHK 300 ENDHSVEGKS HKKLKVEGSN SISSESQKST SEVGSSGKDA AKQYKRLGEA VVQRLVESFK 360 ENQYPKQDVK QSLAKELGLR VQQVGKWFEN ARWSFRHSSR MESKMVAAAS TNGSSLRTRV 420 HVMSLAAKQS PVLPSPSDSG MENLISSQVR PGNEECQITD AGEGKSVESE ASGEKSTRKR 480 KVDNQGSGAG NCMKQDQHDD TPKSQGVRQR DRIQRRGRKS S

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

SMLNCVGFQS PFVLLSWCAV PPDDEGWLCP GCDCKLDCVG MLNDFQESTL SVTDNWEKVF  60
PEEAAAAASG KTMDEGTGLP SDDSEDDDYN PDDPGLDHEV SRGESTSDGS DYFSASDDIV  120
PPLDNKQIFS PPSDDSEDDE YDPDAPDDDQ QEKEESSSSD FTSDSEDLGA ILEDGESPNK  180
DEGHFPSVSE DSKPNAVASG EKLKAGKRKG RSLNDELSYL TESNTEAVSG KRRGERLDYK  240
KLHDEAYRNA TSDSSDEDYT ETAGAKRRKS NAGKAIRICT NKIQDRNDRT DTMDGNQNHK  300
ENDHSVEGKS HKKLKVEGSN SISSESQKST SEVGSSGKDA AKQYKRLGEA VVQRLVESFK  360
ENQYPKQDVK QSLAKELGLR VQQVGKWFEN ARWSFRHSSR MESKMVAAAS TNGSSLRTRV  420
HVMSLAAKQS PVLPSPSDSG MENLISSQVR PGNEECQITD AGEGKSVESE ASGEKSTRKR  480
KVDNQGSGAG NCMKQDQHDD TPKSQGVRQR DRIQRRGRKS S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106044.1	1e-115	pathogenesis-related homeodomain protein isoform X1
TrEMBL	A0A068TM20	1e-113	A0A068TM20_COFCA; Uncharacterized protein