PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11227_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 295aa    MW: 33444 Da    PI: 6.6272
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11227_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.1e-1875129256
                                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                           rk+ +++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  cra_locus_11227_iso_5_len_1205_ver_3  75 RKKGRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 129
                                           67778999**********************************************9 PP
2HD-ZIP_I/II1292e-4175167193
                           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydal 73 
                                           +kk rl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++a+
  cra_locus_11227_iso_5_len_1205_ver_3  75 RKKGRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDILKRQFEAI 147
                                           6999********************************************************************* PP

                           HD-ZIP_I/II  74 keenerLekeveeLreelke 93 
                                           k+en++L++++++L++e+++
  cra_locus_11227_iso_5_len_1205_ver_3 148 KAENDALQAQNQKLHAEIMA 167
                                           ***************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-1964133IPR009057Homeodomain-like
PROSITE profilePS5007117.49171131IPR001356Homeobox domain
SMARTSM003891.6E-1773135IPR001356Homeobox domain
PfamPF000461.8E-1575129IPR001356Homeobox domain
CDDcd000861.78E-1575132No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1976138IPR009057Homeodomain-like
PRINTSPR000311.2E-5102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5111127IPR000047Helix-turn-helix motif
PfamPF021836.8E-17131171IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MLQTSHEDEH PHHQHPPTSL STPILSQDFH GVASFLGKRS MSFSGVDICD QDGVGGGGGH  60
GGEDDLSDDG SNWERKKGRL NMEQVKTLEK NFELGNKLEP ERKMQLARAL GLQPRQIAIW  120
FQNRRARWKT KQLEKDYDIL KRQFEAIKAE NDALQAQNQK LHAEIMALKN REPTESINLN  180
KETEGSCSNR SENSSDNIKL DISRTTPAID SHPQTSRPFF PSSLIRPNTA QQLFQTTSSS  240
SRPPPADHHH LIQCQNNNNN NPTATVKEES SLCNMFCTID DQTGFWPWLE QHHFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027151684.11e-139homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC031e-111ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA1DR780.0A1DR78_CATRO; DNA-binding protein (Fragment)
STRINGXP_002520111.11e-138(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]