PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11227_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 227aa MW: 26432.6 Da PI: 8.6613 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.7e-18 | 7 | 61 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k cra_locus_11227_iso_2_len_1353_ver_3 7 RKKGRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 61 67778999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.7 | 1.1e-41 | 7 | 99 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 +kk rl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++a+k+ cra_locus_11227_iso_2_len_1353_ver_3 7 RKKGRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDILKRQFEAIKA 81 6999*********************************************************************** PP HD-ZIP_I/II 76 enerLekeveeLreelke 93 en++L++++++L++e+++ cra_locus_11227_iso_2_len_1353_ver_3 82 ENDALQAQNQKLHAEIMA 99 *************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.346 | 3 | 63 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.15E-18 | 5 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.6E-17 | 5 | 67 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-15 | 7 | 61 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.75E-14 | 7 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-20 | 8 | 70 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.8E-6 | 34 | 43 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 38 | 61 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.8E-6 | 43 | 59 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.5E-17 | 63 | 103 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MDHNWERKKG RLNMEQVKTL EKNFELGNKL EPERKMQLAR ALGLQPRQIA IWFQNRRARW 60 KTKQLEKDYD ILKRQFEAIK AENDALQAQN QKLHAEIMAL KNREPTESIN LNKETEGSCS 120 NRSENSSDNI KLDISRTTPA IDSHPQTSRP FFPSSLIRPN TAQQLFQTTS SSSRPPPADH 180 HHLIQCQNNN NNNPTATVKE ESSLCNMFCT IDDQTGFWPW LEQHHFN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 63 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002520111.1 | 1e-114 | homeobox-leucine zipper protein ATHB-13 | ||||
Refseq | XP_015575250.1 | 1e-114 | homeobox-leucine zipper protein ATHB-13 | ||||
Swissprot | Q8LC03 | 1e-92 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A1DR78 | 1e-160 | A1DR78_CATRO; DNA-binding protein (Fragment) | ||||
STRING | XP_002520111.1 | 1e-114 | (Ricinus communis) |