PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11215_iso_7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bZIP | ||||||||
Protein Properties | Length: 324aa MW: 36342.1 Da PI: 7.6119 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37.1 | 7e-12 | 39 | 68 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 +k++rr+++NReAAr+sR+RKka++++Le cra_locus_11215_iso_7_len_1980_ver_3 39 DKVQRRLAQNREAARKSRLRKKAYVQQLEA 68 79**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 0.0012 | 36 | 89 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.623 | 38 | 75 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.6E-8 | 39 | 68 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.8E-7 | 39 | 79 | No hit | No description |
SuperFamily | SSF57959 | 3.09E-7 | 40 | 71 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 43 | 58 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.7E-29 | 127 | 200 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
XGLCIIPKAD ARLNEKSDYP PQESLTPQID TQAAKPFTDK VQRRLAQNRE AARKSRLRKK 60 AYVQQLEASR LKLAQLELEI EKARHQGGCF GGAGSNIGIN GPVDPAAIAA FEVEYGLWVE 120 EQQRKTSELR NVLQSSISDV QLHIVVENVL NHYHDLFRMK ADAAKADVFY LVSGVWRTSV 180 ERFFLWIGGF RPSELVNILM PQLEPLTDQQ LVDVCNLRHS CQQAEDALSQ GIDKLQQTLA 240 QSIAVDLTGV GNYGAHMASS MDKLEALETF VNQADHLRQQ TLQQMSRILT TRQAARALLA 300 FGEYFQRLRA LSSLWAARPH ESTS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00157 | DAP | Transfer from AT1G22070 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027090078.1 | 0.0 | transcription factor TGA7-like | ||||
Refseq | XP_027090079.1 | 0.0 | transcription factor TGA7-like | ||||
Swissprot | Q39234 | 1e-136 | TGA3_ARATH; Transcription factor TGA3 | ||||
TrEMBL | A0A068TY62 | 0.0 | A0A068TY62_COFCA; Uncharacterized protein | ||||
STRING | XP_009588814.1 | 1e-167 | (Nicotiana tomentosiformis) |