PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11215_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 336aa MW: 37735 Da PI: 8.6138

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11215_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37	7.4e-12	51	80	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 +k++rr+++NReAAr+sR+RKka++++Le cra_locus_11215_iso_6_len_2321_ver_3 51 DKVQRRLAQNREAARKSRLRKKAYVQQLEA 80 79**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0012	48	101	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.623	50	87	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.7E-8	51	80	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.8E-7	51	91	No hit	No description
SuperFamily	SSF57959	3.24E-7	52	83	No hit	No description
PROSITE pattern	PS00036	0	55	70	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.3E-29	139	212	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009862	Biological Process	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MTSSTQFAPS RRMGIYDSVH QISMWEDTLR SHISSNAGLC IIPKAAKPFT DKVQRRLAQN 60 REAARKSRLR KKAYVQQLEA SRLKLAQLEL EIEKARHQGG CFGGAGSNIG INGPVDPAAI 120 AAFEVEYGLW VEEQQRKTSE LRNVLQSSIS DVQLHIVVEN VLNHYHDLFR MKADAAKADV 180 FYLVSGVWRT SVERFFLWIG GFRPSELVNI LMPQLEPLTD QQLVDVCNLR HSCQQAEDAL 240 SQGIDKLQQT LAQSIAVDLT GVGNYGAHMA SSMDKLEALE TFVNQADHLR QQTLQQMSRI 300 LTTRQAARAL LAFGEYFQRL RALSSLWAAR PHESTS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00157	DAP	Transfer from AT1G22070	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027090078.1	0.0	transcription factor TGA7-like
Refseq	XP_027090079.1	0.0	transcription factor TGA7-like
Swissprot	Q39162	1e-142	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A068TY62	0.0	A0A068TY62_COFCA; Uncharacterized protein
STRING	XP_009588814.1	1e-173	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]