PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11215_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 287aa MW: 31991.2 Da PI: 6.2552

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11215_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.3	5.9e-12	39	68	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 +k++rr+++NReAAr+sR+RKka++++Le cra_locus_11215_iso_5_len_2327_ver_3 39 DKVQRRLAQNREAARKSRLRKKAYVQQLEA 68 79**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0012	36	89	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.623	38	75	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-8	39	68	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.3E-7	39	79	No hit	No description
SuperFamily	SSF57959	2.53E-7	40	71	No hit	No description
PROSITE pattern	PS00036	0	43	58	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.0E-29	127	200	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009862	Biological Process	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
XGLCIIPKAD ARLNEKSDYP PQESLTPQID TQAAKPFTDK VQRRLAQNRE AARKSRLRKK 60 AYVQQLEASR LKLAQLELEI EKARHQGGCF GGAGSNIGIN GPVDPAAIAA FEVEYGLWVE 120 EQQRKTSELR NVLQSSISDV QLHIVVENVL NHYHDLFRMK ADAAKADVFY LVSGVWRTSV 180 ERFFLWIGGF RPSELVNILM PQLEPLTDQQ LVDVCNLRHS CQQAEDALSQ GIDKLQQTLA 240 QSIAVDLTGV GNYGAHMASS MDKLEALETF VNQVIFSTIN KLGDVNI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00157	DAP	Transfer from AT1G22070	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027092911.1	1e-150	transcription factor TGA7-like
Refseq	XP_027092912.1	1e-150	transcription factor TGA7-like
Swissprot	Q39162	1e-103	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A068TY62	1e-148	A0A068TY62_COFCA; Uncharacterized protein
STRING	XP_009588814.1	1e-134	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]