PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11215_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 358aa MW: 40302.6 Da PI: 8.3192

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11215_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.9	3.4e-11	74	102	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 +++rr+++NReAAr+sR+RKka++++Le cra_locus_11215_iso_3_len_2081_ver_3 74 QVQRRLAQNREAARKSRLRKKAYVQQLEA 102 789************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00170	1.0E-7	74	102	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.1E-7	76	102	No hit	No description
SuperFamily	SSF57959	9.64E-7	76	105	No hit	No description
PROSITE pattern	PS00036	0	77	92	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.0E-28	161	234	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009862	Biological Process	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
XGLCIIPKAD ARLNEKSDYP PQESLTPQID TQAAKPFTDK VKLLLFQLSK KLVRISLETY 60 ETIILNEVRX AISQVQRRLA QNREAARKSR LRKKAYVQQL EASRLKLAQL ELEIEKARHQ 120 GGCFGGAGSN IGINGPVDPA AIAAFEVEYG LWVEEQQRKT SELRNVLQSS ISDVQLHIVV 180 ENVLNHYHDL FRMKADAAKA DVFYLVSGVW RTSVERFFLW IGGFRPSELV NILMPQLEPL 240 TDQQLVDVCN LRHSCQQAED ALSQGIDKLQ QTLAQSIAVD LTGVGNYGAH MASSMDKLEA 300 LETFVNQADH LRQQTLQQMS RILTTRQAAR ALLAFGEYFQ RLRALSSLWA ARPHESTS

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

XGLCIIPKAD ARLNEKSDYP PQESLTPQID TQAAKPFTDK VKLLLFQLSK KLVRISLETY  60
ETIILNEVRX AISQVQRRLA QNREAARKSR LRKKAYVQQL EASRLKLAQL ELEIEKARHQ  120
GGCFGGAGSN IGINGPVDPA AIAAFEVEYG LWVEEQQRKT SELRNVLQSS ISDVQLHIVV  180
ENVLNHYHDL FRMKADAAKA DVFYLVSGVW RTSVERFFLW IGGFRPSELV NILMPQLEPL  240
TDQQLVDVCN LRHSCQQAED ALSQGIDKLQ QTLAQSIAVD LTGVGNYGAH MASSMDKLEA  300
LETFVNQADH LRQQTLQQMS RILTTRQAAR ALLAFGEYFQ RLRALSSLWA ARPHESTS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269\|PubMed:12897257}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00157	DAP	Transfer from AT1G22070	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027090078.1	1e-176	transcription factor TGA7-like
Refseq	XP_027090079.1	1e-176	transcription factor TGA7-like
Swissprot	Q39234	1e-133	TGA3_ARATH; Transcription factor TGA3
TrEMBL	A0A068TY62	1e-176	A0A068TY62_COFCA; Uncharacterized protein
STRING	XP_009588814.1	1e-160	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7. PLoS ONE, 2013. 8(12): p. e82032 [PMID:24324742] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Fang H, et al. The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis. Plant J., 2017. 91(6): p. 1038-1050 [PMID:28670772] Sarkar S, et al. Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta. Planta, 2018. 247(1): p. 181-199 [PMID:28913593]