PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11133_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GATA | ||||||||
Protein Properties | Length: 259aa MW: 27935.6 Da PI: 10.6058 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.7 | 1.4e-17 | 160 | 193 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + cra_locus_11133_iso_4_len_1401_ver_3 160 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 193 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.556 | 154 | 190 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.2E-16 | 154 | 204 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.14E-15 | 158 | 217 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 9.9E-15 | 158 | 191 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.63E-13 | 159 | 208 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 160 | 185 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.9E-15 | 160 | 193 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MALTFVEDSF SGGGLTVGKE NSSVKETSHN KFHTSSPVSV LESSSSSSSS CSGGKVIPLG 60 SNHRGPQRAR SKRPRPATFN PRPAIRLITP TSSFCETPQP FLSSGVSSES ENFAESVPAR 120 KFPKPEATEQ KKKKKVKLAA PVGPLDTTNQ NTSQQAVRKC LHCEITKTPQ WRAGPMGPKT 180 LCNACGVRYK SGRLFPEYRP AASPTFIPSL HSNSHKKVLE MRNVDNTNKT NNGATPAATN 240 PSTGQRDVIA DVKPKIDYI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 75 | KRPRP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027104975.1 | 1e-105 | GATA transcription factor 8-like | ||||
Refseq | XP_027104976.1 | 1e-105 | GATA transcription factor 8-like | ||||
Refseq | XP_027158950.1 | 1e-105 | GATA transcription factor 8-like | ||||
Refseq | XP_027158951.1 | 1e-105 | GATA transcription factor 8-like | ||||
TrEMBL | A0A1S4CA08 | 1e-101 | A0A1S4CA08_TOBAC; GATA transcription factor | ||||
TrEMBL | A0A1U7UXU6 | 1e-101 | A0A1U7UXU6_NICSY; GATA transcription factor | ||||
STRING | XP_009760862.1 | 1e-102 | (Nicotiana sylvestris) |