PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11097_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bZIP | ||||||||
Protein Properties | Length: 261aa MW: 28955.2 Da PI: 9.3894 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.7 | 3.4e-10 | 98 | 139 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L cra_locus_11097_iso_5_len_783_ver_3 98 QKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 139 5788*************************9877777766655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.2E-8 | 90 | 142 | No hit | No description |
SMART | SM00338 | 8.6E-10 | 95 | 158 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.438 | 97 | 141 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 7.47E-23 | 99 | 151 | No hit | No description |
SuperFamily | SSF57959 | 3.02E-7 | 99 | 142 | No hit | No description |
Pfam | PF00170 | 3.1E-7 | 99 | 139 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 102 | 117 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.0E-32 | 181 | 256 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
LQSGTFNKTA NSKFPATVPG SQTIQLQKGS QPNLASVSGA HNENWGESNM ADSSSRTDTS 60 TDVDGEDKSQ RVEMGQSAGA GAGAYDSGDK SKEKNMDQKT LRRLAQNREA ARKSRLRKKA 120 YVQQLENSRL KLTQLEQELQ RARQQGVFIS SMGDQSHTLS GNGAMAYDAE YARWLEEHNR 180 HINELRTAVN SHASDSDLRI MIDNVATHFN DVFRLKGSAA KADVFHILSG MWKTPAERCF 240 MWIGGFRPSE LLKLLVSHLE P |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027123246.1 | 1e-149 | transcription factor TGA2.3-like isoform X1 | ||||
Refseq | XP_027123247.1 | 1e-149 | transcription factor TGA2.3-like isoform X1 | ||||
Refseq | XP_027175555.1 | 1e-149 | transcription factor TGA2.3-like | ||||
Refseq | XP_027175556.1 | 1e-149 | transcription factor TGA2.3-like | ||||
Swissprot | O24160 | 1e-132 | TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1 | ||||
TrEMBL | A0A068UMV1 | 1e-146 | A0A068UMV1_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400060926 | 1e-131 | (Solanum tuberosum) |