PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11097_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 289aa    MW: 32049.2 Da    PI: 6.9722
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11097_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.9e-10126167445
                                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                                            k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  cra_locus_11097_iso_3_len_1318_ver_3 126 QKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 167
                                           5788*************************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.3E-8118170No hitNo description
SMARTSM003388.6E-10123186IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.438125169IPR004827Basic-leucine zipper domain
PfamPF001703.7E-7127167IPR004827Basic-leucine zipper domain
CDDcd147082.63E-24127179No hitNo description
SuperFamilySSF579593.52E-7127170No hitNo description
PROSITE patternPS000360130145IPR004827Basic-leucine zipper domain
PfamPF141441.2E-32209284IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAEGNTNPSR LSDFGVLEQY LGFRIGDNSN LDRSTIFNPV ATTAATGTDL QSGTFNKXQP  60
NLASVSGAHN ENWGESNMAD SSSRTDTSTD VDGEDKSQRV EMGQSAGAGA GAYDSGDKSK  120
EKNMDQKTLR RLAQNREAAR KSRLRKKAYV QQLENSRLKL TQLEQELQRA RQQGVFISSM  180
GDQSHTLSGN GAMAYDAEYA RWLEEHNRHI NELRTAVNSH ASDSDLRIMI DNVATHFNDV  240
FRLKGSAAKA DVFHILSGMW KTPAERCFMW IGGFRPSELL KLLVSHLEP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123246.11e-159transcription factor TGA2.3-like isoform X1
RefseqXP_027123247.11e-159transcription factor TGA2.3-like isoform X1
RefseqXP_027175555.11e-159transcription factor TGA2.3-like
RefseqXP_027175556.11e-159transcription factor TGA2.3-like
SwissprotO241601e-146TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A068UMV11e-156A0A068UMV1_COFCA; Uncharacterized protein
STRINGVIT_08s0007g05170.t011e-145(Vitis vinifera)
STRINGPGSC0003DMT4000609261e-145(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385