PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11012_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 407aa MW: 45725.2 Da PI: 7.9578

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11012_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.3	1.3e-31	251	305	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt+eLH+rFve+v++LGG++kAtPk++l+lm+ +gLt+ hvkSHLQkYR cra_locus_11012_iso_4_len_1674_ver_3 251 KTRIRWTQELHDRFVECVNRLGGADKATPKAVLKLMDWEGLTIFHVKSHLQKYRN 305 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.506	248	308	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-28	249	306	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.02E-17	249	305	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-23	251	306	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-8	255	304	IPR001005	SANT/Myb domain
Pfam	PF14379	4.9E-19	334	381	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MDIQKISQQQ RMVQNYGFAG DYTLEFSNRF PQCFGSQQQF PDSGLCFQSP IRDDDGSQKQ 60 NIWPDNSSST MISHIGPPST AFFATERYMG LAQYDSRDNK DSSCCSQLSK NYDIQQQVPS 120 PYEQTGNVFF ADSCAPVEAT FHSKNGLQLV KEGSKSLGSP HLNSDGPYRN PFSNLSEKER 180 ILHLKNKLLG DCDIVNIRRP SVSFDGNQDG VVSCNWYGSH FAQLKQSGRP SACLSLASNN 240 SASSGGILSN KTRIRWTQEL HDRFVECVNR LGGADKATPK AVLKLMDWEG LTIFHVKSHL 300 QKYRNAKYMP DSAEGKSDKR PGTSAAPIDI KTGMQLKEAL QLQLDVQRRL HEQLEIQRKL 360 QLSIEEQGRQ LKMMIDQQQK TTRSLLETQT SPNPTYLSTT PETMNDS

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MDIQKISQQQ RMVQNYGFAG DYTLEFSNRF PQCFGSQQQF PDSGLCFQSP IRDDDGSQKQ  60
NIWPDNSSST MISHIGPPST AFFATERYMG LAQYDSRDNK DSSCCSQLSK NYDIQQQVPS  120
PYEQTGNVFF ADSCAPVEAT FHSKNGLQLV KEGSKSLGSP HLNSDGPYRN PFSNLSEKER  180
ILHLKNKLLG DCDIVNIRRP SVSFDGNQDG VVSCNWYGSH FAQLKQSGRP SACLSLASNN  240
SASSGGILSN KTRIRWTQEL HDRFVECVNR LGGADKATPK AVLKLMDWEG LTIFHVKSHL  300
QKYRNAKYMP DSAEGKSDKR PGTSAAPIDI KTGMQLKEAL QLQLDVQRRL HEQLEIQRKL  360
QLSIEEQGRQ LKMMIDQQQK TTRSLLETQT SPNPTYLSTT PETMNDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-23	251	308	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-23	251	308	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-23	251	308	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-23	251	308	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073078.1	1e-164	myb family transcription factor PHL5-like
TrEMBL	A0A068UPE8	1e-159	A0A068UPE8_COFCA; Uncharacterized protein
STRING	XP_009603787.1	1e-130	(Nicotiana tomentosiformis)