PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11012_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 435aa MW: 48916.5 Da PI: 8.3111

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11012_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.2	1.4e-31	279	333	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt+eLH+rFve+v++LGG++kAtPk++l+lm+ +gLt+ hvkSHLQkYR cra_locus_11012_iso_2_len_1757_ver_3 279 KTRIRWTQELHDRFVECVNRLGGADKATPKAVLKLMDWEGLTIFHVKSHLQKYRN 333 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.506	276	336	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-28	277	334	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.55E-17	277	333	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-23	279	334	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-8	283	332	IPR001005	SANT/Myb domain
Pfam	PF14379	5.3E-19	362	409	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MDIQKISQQQ RMVQNYGFAG DYTLEFSNRF PQCFGSQQQF PDSGLCFQSP IRDDDGSQKQ 60 NIWPDNSSST MISHIGPPST AFFATERYMG LAQYDSRDNK DSSCCSQLSK NYDIQQQVPS 120 PYEQTGNVFF ADSCAPVEAT FHSKNGLQLV KEGSKSLGSP HLNSDGPYRN PFSNLSEKER 180 ILHLKNKLLG DCDIVNIRRP SVSFDGNQDG VVSFTXSSDF YLALKHLFTL IIAPNTFCRY 240 RAIGMAXHFA QLKQSGRPSA CLSLASNNSA SSGGILSNKT RIRWTQELHD RFVECVNRLG 300 GADKATPKAV LKLMDWEGLT IFHVKSHLQK YRNAKYMPDS AEGKSDKRPG TSAAPIDIKT 360 GMQLKEALQL QLDVQRRLHE QLEIQRKLQL SIEEQGRQLK MMIDQQQKTT RSLLETQTSP 420 NPTYLSTTPE TMNDS

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MDIQKISQQQ RMVQNYGFAG DYTLEFSNRF PQCFGSQQQF PDSGLCFQSP IRDDDGSQKQ  60
NIWPDNSSST MISHIGPPST AFFATERYMG LAQYDSRDNK DSSCCSQLSK NYDIQQQVPS  120
PYEQTGNVFF ADSCAPVEAT FHSKNGLQLV KEGSKSLGSP HLNSDGPYRN PFSNLSEKER  180
ILHLKNKLLG DCDIVNIRRP SVSFDGNQDG VVSFTXSSDF YLALKHLFTL IIAPNTFCRY  240
RAIGMAXHFA QLKQSGRPSA CLSLASNNSA SSGGILSNKT RIRWTQELHD RFVECVNRLG  300
GADKATPKAV LKLMDWEGLT IFHVKSHLQK YRNAKYMPDS AEGKSDKRPG TSAAPIDIKT  360
GMQLKEALQL QLDVQRRLHE QLEIQRKLQL SIEEQGRQLK MMIDQQQKTT RSLLETQTSP  420
NPTYLSTTPE TMNDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	279	336	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	279	336	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-23	279	336	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	279	336	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	279	336	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	279	336	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	279	336	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	279	336	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	279	336	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	279	336	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	279	336	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	279	336	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073078.1	1e-154	myb family transcription factor PHL5-like
TrEMBL	A0A068UPE8	1e-150	A0A068UPE8_COFCA; Uncharacterized protein
STRING	XP_009603787.1	1e-124	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2491	24	58