PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11012_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 411aa MW: 46144.5 Da PI: 8.2041

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11012_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.3	1.3e-31	255	309	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt+eLH+rFve+v++LGG++kAtPk++l+lm+ +gLt+ hvkSHLQkYR cra_locus_11012_iso_1_len_1685_ver_3 255 KTRIRWTQELHDRFVECVNRLGGADKATPKAVLKLMDWEGLTIFHVKSHLQKYRN 309 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.506	252	312	IPR017930	Myb domain
SuperFamily	SSF46689	5.02E-17	253	309	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-28	253	310	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-23	255	310	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-8	259	308	IPR001005	SANT/Myb domain
Pfam	PF14379	4.9E-19	338	385	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MDIQKISQQQ RMVQNYGFAG DYTLEFSNRF PQCFGSQQQF PDSGLCFQSP IRDDDGSQKQ 60 NIWPDNSSST MISHIGPPST AFFATERYMG LAQYDSRDNK DSSCCSQLSK NYDIQQQVPS 120 PYEQTGNVFF ADSCAPVEAT FHSKNGLQLV KEGSKSLGSP HLNSDGPYRN PFSNLSEKER 180 ILHLKNKLLG DCDIVNIRRP SVSFDGNQDG VVSFTYRAIG MAXHFAQLKQ SGRPSACLSL 240 ASNNSASSGG ILSNKTRIRW TQELHDRFVE CVNRLGGADK ATPKAVLKLM DWEGLTIFHV 300 KSHLQKYRNA KYMPDSAEGK SDKRPGTSAA PIDIKTGMQL KEALQLQLDV QRRLHEQLEI 360 QRKLQLSIEE QGRQLKMMID QQQKTTRSLL ETQTSPNPTY LSTTPETMND S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MDIQKISQQQ RMVQNYGFAG DYTLEFSNRF PQCFGSQQQF PDSGLCFQSP IRDDDGSQKQ  60
NIWPDNSSST MISHIGPPST AFFATERYMG LAQYDSRDNK DSSCCSQLSK NYDIQQQVPS  120
PYEQTGNVFF ADSCAPVEAT FHSKNGLQLV KEGSKSLGSP HLNSDGPYRN PFSNLSEKER  180
ILHLKNKLLG DCDIVNIRRP SVSFDGNQDG VVSFTYRAIG MAXHFAQLKQ SGRPSACLSL  240
ASNNSASSGG ILSNKTRIRW TQELHDRFVE CVNRLGGADK ATPKAVLKLM DWEGLTIFHV  300
KSHLQKYRNA KYMPDSAEGK SDKRPGTSAA PIDIKTGMQL KEALQLQLDV QRRLHEQLEI  360
QRKLQLSIEE QGRQLKMMID QQQKTTRSLL ETQTSPNPTY LSTTPETMND S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-23	255	312	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-23	255	312	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-23	255	312	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-23	255	312	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073078.1	1e-158	myb family transcription factor PHL5-like
TrEMBL	A0A068UPE8	1e-153	A0A068UPE8_COFCA; Uncharacterized protein
STRING	XP_009603787.1	1e-126	(Nicotiana tomentosiformis)