PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10952_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 359aa    MW: 39233 Da    PI: 8.944
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10952_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.74e-48201371128
                                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73 
                                           lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r
  cra_locus_10952_iso_2_len_1602_ver_3  20 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-SIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGAR 91 
                                           79****************************.89***************988899******************* PP

                                   NAM  74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                           +nra++sgyWkatg+         ++vg+kk Lvfy g+ pkg kt+W+mheyrl
  cra_locus_10952_iso_2_len_1602_ver_3  92 PNRAATSGYWKATGT---------QKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 137
                                           *************98.........4699*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-6016171IPR003441NAC domain
PROSITE profilePS5100548.72820171IPR003441NAC domain
PfamPF023652.8E-2721137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MESTDSSTGG GGGCSQQPHL PPGFRFHPTD EELVVHYLKK KAASAPLPVS IIAEVDLYKF  60
DPWELPAKAT FGEQEWYFFS PRDRKYPNGA RPNRAATSGY WKATGTQKVG VKKALVFYGG  120
KPPKGIKTNW IMHEYRLADN KTNSKPPGCD IANKKGSLRL DDWVLCRIYK KNNTPRPMDH  180
DRDDMNDLMA SIPPSISLGQ PKLPGLKTTN YGALLENEHN LFDGMLSADL NSGGSMSQLT  240
SSASKQQLSL LAGASNVLPA KRTLNSLYWN DDVGNGNSPP TKRFLADSSD GSMATRNDEN  300
ASIASLLSQL PQTPSLHQQS MLGSLGDGVF RQPYQVSGMN WYSXIIKDSA SEAAAVMIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-711717417171NAC domain-containing protein 19
3swm_B2e-711717417171NAC domain-containing protein 19
3swm_C2e-711717417171NAC domain-containing protein 19
3swm_D2e-711717417171NAC domain-containing protein 19
3swp_A2e-711717417171NAC domain-containing protein 19
3swp_B2e-711717417171NAC domain-containing protein 19
3swp_C2e-711717417171NAC domain-containing protein 19
3swp_D2e-711717417171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027127641.10.0NAC transcription factor 56-like
RefseqXP_027172492.10.0NAC transcription factor 56
SwissprotQ9LD441e-112NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A2U9IY250.0A0A2U9IY25_CATRO; NAC domain containing protein 056
STRINGcassava4.1_022751m1e-177(Manihot esculenta)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]