PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_10934_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 28120.9 Da PI: 9.8812 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.7 | 4.4e-13 | 61 | 107 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN + +Lr+l+P K++Ka+ L ++++++k+L cra_locus_10934_iso_1_len_1438_ver_3 61 RNHSEAERRRRERINGHLTTLRSLIPGT-----SKMDKAALLAQVINHVKEL 107 58*************************7.....6****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.025 | 58 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.05E-4 | 61 | 109 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-14 | 61 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.2E-11 | 61 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-14 | 62 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.7E-13 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDFLNSFSGF SGNYAFQRTV KNGSSSSSSL VLDHEKGELV RSLVRPGQKG VNAEKALIAL 60 RNHSEAERRR RERINGHLTT LRSLIPGTSK MDKAALLAQV INHVKELRKN AAEATKGMLV 120 PTDVDEVRVE QQTDGVGESS YVIRASLCCD YKQELLNDLR QALETLPLKT MRAEIATLGN 180 RMVNVFVISA CDGGKFKETD EGQLLASSVR QVLMSVLDKF YASEEFSSRN ALSSKRRRVS 240 FFNSVNSSSA GNLW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 71 | ERRRRE |
2 | 234 | 238 | KRRRV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027171205.1 | 1e-127 | transcription factor bHLH30-like | ||||
TrEMBL | A0A068V5H9 | 1e-124 | A0A068V5H9_COFCA; Uncharacterized protein | ||||
STRING | XP_009786357.1 | 1e-117 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11989 | 21 | 23 |