PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_10924_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28916.8 Da PI: 7.5407 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.6 | 1.1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ cra_locus_10924_iso_2_len_1091_ver_3 9 KRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSHKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 110.9 | 1.3e-36 | 78 | 174 | 4 | 99 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 ++ +s + ++ ++ ++ e+ kLk++ie Lqr++R+++GedL+s+sl++Lq+LeqqL+++lk+iRs+Kn+l++e cra_locus_10924_iso_2_len_1091_ver_3 78 RQLTSnNPDSAQADWTLEYVKLKAKIELLQRNHRQYMGEDLDSMSLRDLQNLEQQLDTALKHIRSRKNQLMYE 150 5555557889999************************************************************ PP K-box 76 qieelqkkekelqeenkaLrkkle 99 +i+elq+kek++qe+n++L kk++ cra_locus_10924_iso_2_len_1091_ver_3 151 SISELQRKEKAIQEQNNMLAKKIK 174 **********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.576 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.6E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.02E-34 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.21E-43 | 2 | 79 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.0E-30 | 86 | 173 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.013 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGRGKVELKR IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVALIVFSH KGKLFEYSTD 60 SSMEKILERY ERYSYAERQL TSNNPDSAQA DWTLEYVKLK AKIELLQRNH RQYMGEDLDS 120 MSLRDLQNLE QQLDTALKHI RSRKNQLMYE SISELQRKEK AIQEQNNMLA KKIKDKEKIM 180 AEQAQWENQQ NHIPPPPNST SFLLPQQLPP CLNVSGTYEG DETAEEARRN ELDLTLDSLY 240 PCHLGCFAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 7e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 7e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 7e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 7e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001268210.1 | 1e-136 | apetala1 | ||||
Refseq | XP_027151189.1 | 1e-136 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q6E6S7 | 1e-137 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A0K2QQ22 | 1e-135 | A0A0K2QQ22_9GENT; MADS box protein | ||||
STRING | VIT_01s0011g00100.t01 | 1e-136 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA499 | 23 | 97 |
Publications ? help Back to Top | |||
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