PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_10924_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 193aa MW: 22196.8 Da PI: 6.925 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.8 | 5e-22 | 9 | 43 | 1 | 35 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaev 35 krienk+nrqvtfskRr g+lKKA+E+SvLCdaev cra_locus_10924_iso_1_len_923_ver_3 9 KRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEV 43 79********************************9 PP | |||||||
2 | K-box | 79.1 | 1.1e-26 | 57 | 118 | 38 | 99 |
K-box 38 llGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +GedL+s+sl++Lq+LeqqL+++lk+iRs+Kn+l++e+i+elq+kek++qe+n++L kk++ cra_locus_10924_iso_1_len_923_ver_3 57 XMGEDLDSMSLRDLQNLEQQLDTALKHIRSRKNQLMYESISELQRKEKAIQEQNNMLAKKIK 118 69**********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.932 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.3E-23 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-21 | 1 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-20 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.7E-18 | 10 | 43 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.438 | 12 | 123 | IPR002487 | Transcription factor, K-box |
PRINTS | PR00404 | 2.9E-20 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-20 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-21 | 57 | 117 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MGRGKVELKR IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVXXXXXXX XXXXXXXMGE 60 DLDSMSLRDL QNLEQQLDTA LKHIRSRKNQ LMYESISELQ RKEKAIQEQN NMLAKKIKDK 120 EKIMAEQAQW ENQQNHIPPP PNSTSFLLPQ QLPPCLNVSG TYEGDETAEE ARRNELDLTL 180 DSLYPCHLGC FAS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001268210.1 | 8e-62 | apetala1 | ||||
Swissprot | Q6E6S7 | 2e-63 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A0L9TN64 | 9e-74 | A0A0L9TN64_PHAAN; Uncharacterized protein | ||||
STRING | Gorai.012G185500.1 | 3e-77 | (Gossypium raimondii) |
Publications ? help Back to Top | |||
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