PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10871_iso_9
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HB-other
Protein Properties Length: 364aa    MW: 41456.5 Da    PI: 4.6575
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10871_iso_9genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.62.8e-10298345653
                                           S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                              Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                           +++k qle+Le+++++++ p+ +++  + + ++L+ r+V  WF  +Ra
  cra_locus_10871_iso_9_len_1446_ver_3 298 RIKKVQLETLERVYKRTKRPTNAMISSIVHVTNLPRRRVLKWFEDQRA 345
                                           68899*****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.8E-5289354IPR001356Homeobox domain
PROSITE profilePS500719.88290350IPR001356Homeobox domain
SuperFamilySSF466897.27E-10291354IPR009057Homeodomain-like
CDDcd000861.25E-7293345No hitNo description
Gene3DG3DSA:1.10.10.608.4E-10298347IPR009057Homeodomain-like
PfamPF000467.8E-8298345IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MATAATSLPI LGGSRSHCSK NQPFFLQHPT NGRTNLILPR PSFHSFSLVA FARRRQNAPN  60
STSVTPKKLK KKKNSMSKDA QEDEELDEDA FEALFRQLEE DLKNDGASLD DFDDDDISEE  120
NLAKLEKELE EALKDDELLG ALGSIEDEKT ENEAEDEEEE GEEDENFRTA YEDHNLEEED  180
DEDNEDDEIP LQLKNWQLKR LAYALKAGRR KTSIKNLAAD LCLDRALVLN LLRDPPPNLL  240
MLSAAVPDKP VSTVVEPVKE PAEAISSEAI PAIEKSEAKA NMKVPVHVMQ RNWSAQKRIK  300
KVQLETLERV YKRTKRPTNA MISSIVHVTN LPRRRVLKWF EDQRAEDGVP ERRLPYQRPL  360
LQDP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15272RRRQNAPNSTSVTPKKLKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551126.11e-125protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A3Q7HP781e-120A0A3Q7HP78_SOLLC; Uncharacterized protein
STRINGSolyc08g061140.2.11e-120(Solanum lycopersicum)