PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10858_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Dof

Protein Properties

Length: 372aa MW: 39669.5 Da PI: 9.6555

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10858_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.4e-39	77	135	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e+ lkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk+ cra_locus_10858_iso_1_len_1282_ver_3 77 EAGLKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKN 135 6679****************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	63	125	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-32	79	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.665	80	134	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	82	118	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MVFSSFPVYL DHPNLHQFHQ QADHHQQVTT GIIDGSQIPP QPPIPPPLGG GVGAPGGSIR 60 PGSMVDRARL AKLPLPEAGL KCPRCDSTNT KFCYFNNYSL SQPRHFCKTC RRYWTRGGAL 120 RNVPVGGGCR RNKKNKGSNS KSSEQQRQQI GISNNPAAIA SSASPSSCSA DLVAHFPQSS 180 SSQLPPLMAA LQNLNHYAAA GGFQGFNLGN INGNDLSDQW RLGNSNNIGG FEGQISNLFP 240 FQSEGGVGVG VGVEGASNTM MGHEQQIGND QNNNMVKTEE NPPVGLNLTK QFFVNSENNQ 300 FWSSTSNTTT NGGNQWTGFS GLNSSSTSHL LXLLLKDSSR RSNGSLKHXR AGKYLSLKEL 360 SAGAAASSSS SS

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MVFSSFPVYL DHPNLHQFHQ QADHHQQVTT GIIDGSQIPP QPPIPPPLGG GVGAPGGSIR  60
PGSMVDRARL AKLPLPEAGL KCPRCDSTNT KFCYFNNYSL SQPRHFCKTC RRYWTRGGAL  120
RNVPVGGGCR RNKKNKGSNS KSSEQQRQQI GISNNPAAIA SSASPSSCSA DLVAHFPQSS  180
SSQLPPLMAA LQNLNHYAAA GGFQGFNLGN INGNDLSDQW RLGNSNNIGG FEGQISNLFP  240
FQSEGGVGVG VGVEGASNTM MGHEQQIGND QNNNMVKTEE NPPVGLNLTK QFFVNSENNQ  300
FWSSTSNTTT NGGNQWTGFS GLNSSSTSHL LXLLLKDSSR RSNGSLKHXR AGKYLSLKEL  360
SAGAAASSSS SS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087140.1	1e-102	dof zinc finger protein DOF3.6-like
Refseq	XP_027164775.1	1e-102	dof zinc finger protein DOF3.6-like
TrEMBL	A0A068UKP4	2e-96	A0A068UKP4_COFCA; Uncharacterized protein
STRING	XP_009774236.1	3e-90	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419