PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1081_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 185aa MW: 20673.9 Da PI: 6.0646 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.1e-18 | 133 | 185 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ cra_locus_1081_iso_3_len_1864_ver_3 133 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRAR 185 788899*********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 82.3 | 7.2e-27 | 133 | 185 | 1 | 53 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRAR cra_locus_1081_iso_3_len_1864_ver_3 133 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRAR 185 69**************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.2E-34 | 1 | 107 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 5.4E-18 | 120 | 183 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.48E-17 | 122 | 185 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.2 | 129 | 185 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-9 | 131 | 185 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.34E-15 | 133 | 185 | No hit | No description |
Pfam | PF00046 | 7.9E-16 | 133 | 185 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.4E-5 | 160 | 169 | IPR000047 | Helix-turn-helix motif |
PRINTS | PR00031 | 1.4E-5 | 169 | 185 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0010016 | Biological Process | shoot system morphogenesis | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MVEKEDLGLS LSLSFPEKQS TNTSSSSPLQ LNLMPSLAAS FLQQKTSWTE TFPSSDRNME 60 GCRVETRTFL KGIDVNRLPA ADAEEEAGVS SPNSTLSSIS GKRSEREANG DDNELERTSS 120 RGISDEEDGD TSRKKLRLSK DQSAILEESF KEHNTLNPKQ KLALAKRLGL RPRQVEVWFQ 180 NRRAR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 137 | SRKKLRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027081049.1 | 1e-100 | homeobox-leucine zipper protein HAT4-like | ||||
Swissprot | P46600 | 8e-58 | HAT1_ARATH; Homeobox-leucine zipper protein HAT1 | ||||
TrEMBL | A0A068UN80 | 5e-99 | A0A068UN80_COFCA; Uncharacterized protein | ||||
STRING | XP_006477139.1 | 1e-91 | (Citrus sinensis) |
Publications ? help Back to Top | |||
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