PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10816_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 329aa MW: 37300.6 Da PI: 7.9422

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10816_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.8	2.1e-32	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+++LGG+ekAtPk +l++m+v gLt++hvkSHLQ+YR+ cra_locus_10816_iso_1_len_1207_ver_3 19 PRLRWTPDLHHCFVHAIDKLGGQEKATPKLVLQMMDVRGLTISHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.141	15	75	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.4E-31	15	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-15	17	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.9E-24	19	73	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-8	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MGSCGRSGGV RQYIRSKVPR LRWTPDLHHC FVHAIDKLGG QEKATPKLVL QMMDVRGLTI 60 SHVKSHLQMY RSMKNDMNRQ GQSVDKSSTQ QKNQSIQDHH HPPPPRQYYC GFEQEENISS 120 DSTMEKSHHH HPPRFSYGSL PTKRARMEEK RSCFSEKLEW RQRIVTKKPY SNDDDYGEKE 180 KETSSTSIIA DKGSAGMKEK KELERFISPP FPLIPQNLFQ NLNYPFTNAN ATAGGGPLEE 240 SDFFKARNEE KCESSEKINA AVWEDGVEGL SLSLSLHHQY HHPSSNASST SEISEAITSS 300 YSRPPSLVDC SGSYSHQYKD VNLDLSIAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027099569.1	3e-90	two-component response regulator ORR22-like isoform X1
Refseq	XP_027099570.1	3e-90	two-component response regulator ORR22-like isoform X1
TrEMBL	A0A068UA23	4e-89	A0A068UA23_COFCA; Uncharacterized protein
STRING	VIT_01s0137g00050.t01	4e-77	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5433	22	38