PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10782_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 700aa MW: 80441.5 Da PI: 7.8493

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10782_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.1	4.4e-21	82	175	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 +fY+++Ak++GFs+r+++++ + + t+r fvC + g++ + ++++k +r+r+++r+gC+a ++++k++ cra_locus_10782_iso_6_len_2552_ver_3 82 EFYSDFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKATNENKPQRNRKSSRCGCQAYMRISKTT 154 6************9998877356667999*************9******************99 PP FAR1 73 ...dgkwevtkleleHnHela 90 +w+vt + ++HnHel cra_locus_10782_iso_6_len_2552_ver_3 155 elgVPEWRVTGFANHHNHELL 175 777789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-17	82	175	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-18	298	389	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.594	576	609	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.6E-8	579	607	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.0E-7	584	611	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence Send to blast
MDSRLQVVLH HVAXAVEYAI MSEEVAQMMA VYDDPSDQRS LSFEETSSTE ESPDETRLSL 60 ETTDDLVPYI GQRFATHDAA YEFYSDFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA 120 GNTPVKATNE NKPQRNRKSS RCGCQAYMRI SKTTELGVPE WRVTGFANHH NHELLEPNQV 180 RFLPAYRTIS DADKSRILMF AKTGISVQQM MRLMELEKGV EPGYLSFTEK DVRNLLQSFK 240 KVDPEDESID LLRMCRNIKD KDPNFKFEFT LDSNNRLENI AWSYASSVHS YEIFGDAVVF 300 DTTHRLTVFD MPLGIWVGMN NYGMPCFFSC VLLREESLRS YSWALKAFLG FMNGKAPQTI 360 LTDQNMCLKE AIAMEMQTTK HALCIWLIVA KFPSWFNAVL GERYNEWKAE FYRLYNLESV 420 EEFELGWRDM VNSFGLHTNR HIASLFALRS LWALSYLRSQ FFAGMTTTAH SKSINAFIQR 480 FLSAQTRLTH FVEQVAVSVD FKDQAGEQQT MQQNLQNLCL KTGAPMESHA ATVLTPFAFS 540 KLQEQLVLAA HYASFQTEDG FLVRHHTKVE GGRKVYWIPR EGIISCSCRL FEFSGILCRH 600 ALRVLSTGNC FQIPDRYLPL RWRRISTPST KPPLLTTQND HAEKIQLLQS MVSNLITESA 660 KSRERLDIAT EQVSILLSRI KEHPVCSQGM RELSSIHRNH

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence Send to blast

MDSRLQVVLH HVAXAVEYAI MSEEVAQMMA VYDDPSDQRS LSFEETSSTE ESPDETRLSL  60
ETTDDLVPYI GQRFATHDAA YEFYSDFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA  120
GNTPVKATNE NKPQRNRKSS RCGCQAYMRI SKTTELGVPE WRVTGFANHH NHELLEPNQV  180
RFLPAYRTIS DADKSRILMF AKTGISVQQM MRLMELEKGV EPGYLSFTEK DVRNLLQSFK  240
KVDPEDESID LLRMCRNIKD KDPNFKFEFT LDSNNRLENI AWSYASSVHS YEIFGDAVVF  300
DTTHRLTVFD MPLGIWVGMN NYGMPCFFSC VLLREESLRS YSWALKAFLG FMNGKAPQTI  360
LTDQNMCLKE AIAMEMQTTK HALCIWLIVA KFPSWFNAVL GERYNEWKAE FYRLYNLESV  420
EEFELGWRDM VNSFGLHTNR HIASLFALRS LWALSYLRSQ FFAGMTTTAH SKSINAFIQR  480
FLSAQTRLTH FVEQVAVSVD FKDQAGEQQT MQQNLQNLCL KTGAPMESHA ATVLTPFAFS  540
KLQEQLVLAA HYASFQTEDG FLVRHHTKVE GGRKVYWIPR EGIISCSCRL FEFSGILCRH  600
ALRVLSTGNC FQIPDRYLPL RWRRISTPST KPPLLTTQND HAEKIQLLQS MVSNLITESA  660
KSRERLDIAT EQVSILLSRI KEHPVCSQGM RELSSIHRNH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028079946.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_028079947.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2R6RGG2	0.0	A0A2R6RGG2_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	XP_009765793.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10896	21	24

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]