PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10782_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 499aa    MW: 57637.4 Da    PI: 7.0452
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10782_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.92.6e-2182175190
                                  FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 
                                           +fY+++Ak++GFs+r+++++ +    +  t+r fvC + g++  + ++++k +r+r+++r+gC+a ++++k++
  cra_locus_10782_iso_5_len_2139_ver_3  82 EFYSDFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKATNENKPQRNRKSSRCGCQAYMRISKTT 154
                                           6**************9998877356667999*****************9**********************99 PP

                                  FAR1  73 ...dgkwevtkleleHnHela 90 
                                                +w+vt + ++HnHel 
  cra_locus_10782_iso_5_len_2139_ver_3 155 elgVPEWRVTGFANHHNHELL 175
                                           777789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.7E-1882175IPR004330FAR1 DNA binding domain
PfamPF105518.4E-19298389IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MDSRLQVVLH HVAXAVEYAI MSEEVAQMMA VYDDPSDQRS LSFEETSSTE ESPDETRLSL  60
ETTDDLVPYI GQRFATHDAA YEFYSDFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA  120
GNTPVKATNE NKPQRNRKSS RCGCQAYMRI SKTTELGVPE WRVTGFANHH NHELLEPNQV  180
RFLPAYRTIS DADKSRILMF AKTGISVQQM MRLMELEKGV EPGYLSFTEK DVRNLLQSFK  240
KVDPEDESID LLRMCRNIKD KDPNFKFEFT LDSNNRLENI AWSYASSVHS YEIFGDAVVF  300
DTTHRLTVFD MPLGIWVGMN NYGMPCFFSC VLLREESLRS YSWALKAFLG FMNGKAPQTI  360
LTDQNMCLKE AIAMEMQTTK HALCIWLIVA KFPSWFNAVL GERYNEWKAE FYRLYNLESV  420
EEFELGWRDM VNSFGLHTNR HIASLFALRS LWALSYLRSQ FFAGMTTTAH SKSINAFIQR  480
FLSAQTRLTH FVEQVCSLI
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079946.10.0protein FAR1-RELATED SEQUENCE 11
RefseqXP_028079947.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2G9GVP80.0A0A2G9GVP8_9LAMI; Uncharacterized protein
STRINGcassava4.1_002947m0.0(Manihot esculenta)
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]