PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_10782_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 398aa MW: 45698.4 Da PI: 6.7789 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.4 | 1.8e-21 | 82 | 175 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 +fY+++Ak++GFs+r+++++ + + t+r fvC + g++ + ++++k +r+r+++r+gC+a ++++k++ cra_locus_10782_iso_3_len_1377_ver_3 82 EFYSDFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKATNENKPQRNRKSSRCGCQAYMRISKTT 154 6**************9998877356667999*****************9**********************99 PP FAR1 73 ...dgkwevtkleleHnHela 90 +w+vt + ++HnHel cra_locus_10782_iso_3_len_1377_ver_3 155 elgVPEWRVTGFANHHNHELL 175 777789*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.0E-18 | 82 | 175 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.8E-19 | 298 | 389 | IPR018289 | MULE transposase domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MDSRLQVVLH HVAXAVEYAI MSEEVAQMMA VYDDPSDQRS LSFEETSSTE ESPDETRLSL 60 ETTDDLVPYI GQRFATHDAA YEFYSDFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA 120 GNTPVKATNE NKPQRNRKSS RCGCQAYMRI SKTTELGVPE WRVTGFANHH NHELLEPNQV 180 RFLPAYRTIS DADKSRILMF AKTGISVQQM MRLMELEKGV EPGYLSFTEK DVRNLLQSFK 240 KVDPEDESID LLRMCRNIKD KDPNFKFEFT LDSNNRLENI AWSYASSVHS YEIFGDAVVF 300 DTTHRLTVFD MPLGIWVGMN NYGMPCFFSC VLLREESLRS YSWALKAFLG FMNGKAPQTI 360 LTDQNMCLKE AIAMEMQTTK HALCIWLIVA KICHPXCX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028079946.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Refseq | XP_028079947.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A2G9GVP8 | 0.0 | A0A2G9GVP8_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_002947m | 0.0 | (Manihot esculenta) |
Publications ? help Back to Top | |||
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