PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10782_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 514aa MW: 58943.9 Da PI: 8.273

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10782_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.9	7.9e-09	82	140	1	58
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraet 58 +fY+++Ak++GFs+r+++++ + + t+r fvC + g++ + ++++k +r+r+ + cra_locus_10782_iso_2_len_1995_ver_3 82 EFYSDFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKATNENKPQRNRKLQ 140 6************9998877356667999*********99999977778887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.0E-6	82	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-10	143	203	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.594	390	423	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.7E-8	393	421	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.0E-7	398	425	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MDSRLQVVLH HVAXAVEYAI MSEEVAQMMA VYDDPSDQRS LSFEETSSTE ESPDETRLSL 60 ETTDDLVPYI GQRFATHDAA YEFYSDFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA 120 GNTPVKATNE NKPQRNRKLQ DVDVKLLREE SLRSYSWALK AFLGFMNGKA PQTILTDQNM 180 CLKEAIAMEM QTTKHALCIW LIVAKFPSWF NAVLGERYNE WKAEFYRLYN LESVEEFELG 240 WRDMVNSFGL HTNRHIASLF ALRSLWALSY LRSQFFAGMT TTAHSKSINA FIQRFLSAQT 300 RLTHFVEQVA VSVDFKDQAG EQQTMQQNLQ NLCLKTGAPM ESHAATVLTP FAFSKLQEQL 360 VLAAHYASFQ TEDGFLVRHH TKVEGGRKVY WIPREGIISC SCRLFEFSGI LCRHALRVLS 420 TGNCFQIPDR YLPLRWRRIS TPSTKPPLLT TQNDHAEKIQ LLQSMVSNLI TESAKSRERL 480 DIATEQVSIL LSRIKEHPVC SQGMRELSSI HRNH

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MDSRLQVVLH HVAXAVEYAI MSEEVAQMMA VYDDPSDQRS LSFEETSSTE ESPDETRLSL  60
ETTDDLVPYI GQRFATHDAA YEFYSDFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA  120
GNTPVKATNE NKPQRNRKLQ DVDVKLLREE SLRSYSWALK AFLGFMNGKA PQTILTDQNM  180
CLKEAIAMEM QTTKHALCIW LIVAKFPSWF NAVLGERYNE WKAEFYRLYN LESVEEFELG  240
WRDMVNSFGL HTNRHIASLF ALRSLWALSY LRSQFFAGMT TTAHSKSINA FIQRFLSAQT  300
RLTHFVEQVA VSVDFKDQAG EQQTMQQNLQ NLCLKTGAPM ESHAATVLTP FAFSKLQEQL  360
VLAAHYASFQ TEDGFLVRHH TKVEGGRKVY WIPREGIISC SCRLFEFSGI LCRHALRVLS  420
TGNCFQIPDR YLPLRWRRIS TPSTKPPLLT TQNDHAEKIQ LLQSMVSNLI TESAKSRERL  480
DIATEQVSIL LSRIKEHPVC SQGMRELSSI HRNH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028079946.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_028079947.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1U8E579	0.0	A0A1U8E579_CAPAN; protein FAR1-RELATED SEQUENCE 11
STRING	XP_009765793.1	0.0	(Nicotiana sylvestris)

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]