PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10741_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 596aa    MW: 65407.4 Da    PI: 4.8935
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10741_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.51.9e-1122305963374
                                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknss 75 
                                           ++L++ A+ +s+ d e+a + L +l+e +s +gdp++R+  yf+eAL++r++r   +  k+l+  + +   s+
  cra_locus_10741_iso_3_len_2298_ver_3 230 KALVDSAR-LSELDPENAVKSLVKLRESVSAQGDPTERVGYYFLEALHNRISR---QSEKTLTIFDLT---SE 295
                                           66777777.67779999************************************...555566666676...78 PP

                                  GRAS  76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgv 147
                                           e +  +k++++++P+ kf+hltaNq Ilea+e+e+ +HiiDf+i qG+QW+aLlqaLa+Rp+g+p ++Ri g+
  cra_locus_10741_iso_3_len_2298_ver_3 296 ELTLCYKALNDACPYSKFAHLTANQSILEATENEKNIHIIDFGIVQGVQWAALLQALATRPAGKPeRIRISGI 368
                                           89999********************************************************76666******* PP

                                  GRAS 148 gspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218
                                            +p+ g   + +l +tg+rL++fA+ l+++fef++ v + ++dl+ +++rvk++E+laVn++lql++lld++ 
  cra_locus_10741_iso_3_len_2298_ver_3 369 PAPSLGknPEPALLATGKRLSDFAQVLDLKFEFEP-VLNPIQDLNQSSFRVKSDEVLAVNFMLQLYNLLDDDN 440
                                           ***99988999************************.7********************************9988 PP

                                  GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                                            + +   + Lkl ksl+P+vv++ e e  +n+  +l+rf +a++yysalf+sl+ +l r+s er  vE+ llg
  cra_locus_10741_iso_3_len_2298_ver_3 441 GSVE---AALKLAKSLNPRVVTLGEYEGRLNRVGYLTRFKNAIKYYSALFESLDPNLTRDSIERLQVEKLLLG 510
                                           8777...9***************************************************************** PP

                                  GRAS 292 reivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lg 361
                                           r+i  ++ +e+   rrer+e +e+Wr  +eeaGF+pv+ls++a++qak ll +++ s  y++ +++  ++ l 
  cra_locus_10741_iso_3_len_2298_ver_3 511 RKIAGAIGAEEPGtRRERMEDKEQWRYLMEEAGFEPVALSHYAMSQAKILLWNYNySSSYTLIDSRPGFLsLA 583
                                           *******9988766*****************************************9999**9877776666** PP

                                  GRAS 362 WkdrpLvsvSaWr 374
                                           W+d pL++vSaWr
  cra_locus_10741_iso_3_len_2298_ver_3 584 WNDLPLLTVSAWR 596
                                           ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.95202574IPR005202Transcription factor GRAS
PfamPF035146.5E-110230596IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MAKPNKLSSK SSNKNXXXXQ QQQQQQQLLG MNPFCLSPWT ANNQSLTNSP TSGFGLAGSG  60
FADPFHVSGG PDAGEPGFQF PALEHHSTGF RFADFAAAAG GEFDSDEWME SFMGGGDSTE  120
SSNLQSGCDA WQPGSDFNLY GTDPFSSCPS RLNIGSSPPS DLNRVIFTES SQWISPSSSS  180
PLPPPLPPPQ ASIKESSKQL PNPSQNEVVS VAACTSSSSP EASPSKPLLK ALVDSARLSE  240
LDPENAVKSL VKLRESVSAQ GDPTERVGYY FLEALHNRIS RQSEKTLTIF DLTSEELTLC  300
YKALNDACPY SKFAHLTANQ SILEATENEK NIHIIDFGIV QGVQWAALLQ ALATRPAGKP  360
ERIRISGIPA PSLGKNPEPA LLATGKRLSD FAQVLDLKFE FEPVLNPIQD LNQSSFRVKS  420
DEVLAVNFML QLYNLLDDDN GSVEAALKLA KSLNPRVVTL GEYEGRLNRV GYLTRFKNAI  480
KYYSALFESL DPNLTRDSIE RLQVEKLLLG RKIAGAIGAE EPGTRRERME DKEQWRYLME  540
EAGFEPVALS HYAMSQAKIL LWNYNYSSSY TLIDSRPGFL SLAWNDLPLL TVSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1432255961375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075560.10.0SCARECROW-LIKE protein 7-like
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A068U3340.0A0A068U334_COFCA; Uncharacterized protein
STRINGSolyc02g085340.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429