PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10741_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 593aa    MW: 65033 Da    PI: 4.8935
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10741_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.51.8e-1122275933374
                                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknss 75 
                                           ++L++ A+ +s+ d e+a + L +l+e +s +gdp++R+  yf+eAL++r++r   +  k+l+  + +   s+
  cra_locus_10741_iso_2_len_2289_ver_3 227 KALVDSAR-LSELDPENAVKSLVKLRESVSAQGDPTERVGYYFLEALHNRISR---QSEKTLTIFDLT---SE 292
                                           66777777.67779999************************************...555566666676...78 PP

                                  GRAS  76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgv 147
                                           e +  +k++++++P+ kf+hltaNq Ilea+e+e+ +HiiDf+i qG+QW+aLlqaLa+Rp+g+p ++Ri g+
  cra_locus_10741_iso_2_len_2289_ver_3 293 ELTLCYKALNDACPYSKFAHLTANQSILEATENEKNIHIIDFGIVQGVQWAALLQALATRPAGKPeRIRISGI 365
                                           89999********************************************************76666******* PP

                                  GRAS 148 gspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218
                                            +p+ g   + +l +tg+rL++fA+ l+++fef++ v + ++dl+ +++rvk++E+laVn++lql++lld++ 
  cra_locus_10741_iso_2_len_2289_ver_3 366 PAPSLGknPEPALLATGKRLSDFAQVLDLKFEFEP-VLNPIQDLNQSSFRVKSDEVLAVNFMLQLYNLLDDDN 437
                                           ***99988999************************.7********************************9988 PP

                                  GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                                            + +   + Lkl ksl+P+vv++ e e  +n+  +l+rf +a++yysalf+sl+ +l r+s er  vE+ llg
  cra_locus_10741_iso_2_len_2289_ver_3 438 GSVE---AALKLAKSLNPRVVTLGEYEGRLNRVGYLTRFKNAIKYYSALFESLDPNLTRDSIERLQVEKLLLG 507
                                           8777...9***************************************************************** PP

                                  GRAS 292 reivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lg 361
                                           r+i  ++ +e+   rrer+e +e+Wr  +eeaGF+pv+ls++a++qak ll +++ s  y++ +++  ++ l 
  cra_locus_10741_iso_2_len_2289_ver_3 508 RKIAGAIGAEEPGtRRERMEDKEQWRYLMEEAGFEPVALSHYAMSQAKILLWNYNySSSYTLIDSRPGFLsLA 580
                                           *******9988766*****************************************9999**9877776666** PP

                                  GRAS 362 WkdrpLvsvSaWr 374
                                           W+d pL++vSaWr
  cra_locus_10741_iso_2_len_2289_ver_3 581 WNDLPLLTVSAWR 593
                                           ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.95199571IPR005202Transcription factor GRAS
PfamPF035146.4E-110227593IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MAKPNKLSSK SSNKNTQQQQ QQQQLLGMNP FCLSPWTANN QSLTNSPTSG FGLAGSGFAD  60
PFHVSGGPDA GEPGFQFPAL EHHSTGFRFA DFAAAAGGEF DSDEWMESFM GGGDSTESSN  120
LQSGCDAWQP GSDFNLYGTD PFSSCPSRLN IGSSPPSDLN RVIFTESSQW ISPSSSSPLP  180
PPLPPPQASI KESSKQLPNP SQNEVVSVAA CTSSSSPEAS PSKPLLKALV DSARLSELDP  240
ENAVKSLVKL RESVSAQGDP TERVGYYFLE ALHNRISRQS EKTLTIFDLT SEELTLCYKA  300
LNDACPYSKF AHLTANQSIL EATENEKNIH IIDFGIVQGV QWAALLQALA TRPAGKPERI  360
RISGIPAPSL GKNPEPALLA TGKRLSDFAQ VLDLKFEFEP VLNPIQDLNQ SSFRVKSDEV  420
LAVNFMLQLY NLLDDDNGSV EAALKLAKSL NPRVVTLGEY EGRLNRVGYL TRFKNAIKYY  480
SALFESLDPN LTRDSIERLQ VEKLLLGRKI AGAIGAEEPG TRRERMEDKE QWRYLMEEAG  540
FEPVALSHYA MSQAKILLWN YNYSSSYTLI DSRPGFLSLA WNDLPLLTVS AWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1432225931375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075560.10.0SCARECROW-LIKE protein 7-like
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A068U3340.0A0A068U334_COFCA; Uncharacterized protein
STRINGSolyc02g085340.1.10.0(Solanum lycopersicum)