PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10741_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 561aa    MW: 61569.7 Da    PI: 4.9932
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10741_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS179.22.9e-552304203198
                                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknss 75 
                                           ++L++ A+ +s+ d e+a + L +l+e +s +gdp++R+  yf+eAL++r++r   +  k+l+  + +   s+
  cra_locus_10741_iso_1_len_2192_ver_3 230 KALVDSAR-LSELDPENAVKSLVKLRESVSAQGDPTERVGYYFLEALHNRISR---QSEKTLTIFDLT---SE 295
                                           66777777.67779999************************************...555566666676...78 PP

                                  GRAS  76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgv 147
                                           e +  +k++++++P+ kf+hltaNq Ilea+e+e+ +HiiDf+i qG+QW+aLlqaLa+Rp+g+p ++Ri g+
  cra_locus_10741_iso_1_len_2192_ver_3 296 ELTLCYKALNDACPYSKFAHLTANQSILEATENEKNIHIIDFGIVQGVQWAALLQALATRPAGKPeRIRISGI 368
                                           89999********************************************************76666******* PP

                                  GRAS 148 gspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                                            +p+ g   + +l +tg+rL++fA+ l+++fef++ v + ++dl+ +++rvk+
  cra_locus_10741_iso_1_len_2192_ver_3 369 PAPSLGknPEPALLATGKRLSDFAQVLDLKFEFEP-VLNPIQDLNQSSFRVKS 420
                                           ***99988999************************.7***********99986 PP
2GRAS130.81.5e-40417561233374
                                  GRAS 233 slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae. 304
                                           +++++ v++ e e  +n+  +l+rf +a++yysalf+sl+ +l r+s er  vE+ llgr+i  ++ +e+   
  cra_locus_10741_iso_1_len_2192_ver_3 417 RVKSDXVTLGEYEGRLNRVGYLTRFKNAIKYYSALFESLDPNLTRDSIERLQVEKLLLGRKIAGAIGAEEPGt 489
                                           578999************************************************************9988766 PP

                                  GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                                           rrer+e +e+Wr  +eeaGF+pv+ls++a++qak ll +++ s  y++ +++  ++ l W+d pL++vSaWr
  cra_locus_10741_iso_1_len_2192_ver_3 490 RRERMEDKEQWRYLMEEAGFEPVALSHYAMSQAKILLWNYNySSSYTLIDSRPGFLsLAWNDLPLLTVSAWR 561
                                           *****************************************9999**9877776666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.717202539IPR005202Transcription factor GRAS
PfamPF035141.0E-52230420IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MAKPNKLSSK SSNKNXXXXQ QQQQQQQLLG MNPFCLSPWT ANNQSLTNSP TSGFGLAGSG  60
FADPFHVSGG PDAGEPGFQF PALEHHSTGF RFADFAAAAG GEFDSDEWME SFMGGGDSTE  120
SSNLQSGCDA WQPGSDFNLY GTDPFSSCPS RLNIGSSPPS DLNRVIFTES SQWISPSSSS  180
PLPPPLPPPQ ASIKESSKQL PNPSQNEVVS VAACTSSSSP EASPSKPLLK ALVDSARLSE  240
LDPENAVKSL VKLRESVSAQ GDPTERVGYY FLEALHNRIS RQSEKTLTIF DLTSEELTLC  300
YKALNDACPY SKFAHLTANQ SILEATENEK NIHIIDFGIV QGVQWAALLQ ALATRPAGKP  360
ERIRISGIPA PSLGKNPEPA LLATGKRLSD FAQVLDLKFE FEPVLNPIQD LNQSSFRVKS  420
DXVTLGEYEG RLNRVGYLTR FKNAIKYYSA LFESLDPNLT RDSIERLQVE KLLLGRKIAG  480
AIGAEEPGTR RERMEDKEQW RYLMEEAGFE PVALSHYAMS QAKILLWNYN YSSSYTLIDS  540
RPGFLSLAWN DLPLLTVSAW R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1202255611375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075560.10.0SCARECROW-LIKE protein 7-like
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A068U3340.0A0A068U334_COFCA; Uncharacterized protein
STRINGSolyc02g085340.1.10.0(Solanum lycopersicum)