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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | cra_locus_1072_iso_2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 283aa MW: 31905.5 Da PI: 6.6851 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 31.8 | 2.6e-10 | 114 | 159 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h ++Er+RR+++ f L ++P + kK +K ++L +++Y+k+Lq
cra_locus_1072_iso_2_len_1039_ver_3 114 HIIAERKRREQLSRQFVALSGIVPGL-----KKTDKTSVLGDTINYLKHLQ 159
899***********************.....9******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 1.44E-15 | 106 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 14.151 | 109 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 8.3E-8 | 114 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 4.44E-9 | 114 | 162 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 8.1E-15 | 114 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 4.4E-11 | 115 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 283 aa Download sequence Send to blast |
ILNMEAPSTS WFSDLGLLEN PLVSDECDMF DFLNQEYLSA AALGKDSQAL CASSAMNIEA 60 PQQWPDNNTY NSFENLTEML PEQVNLEDAA AKMAPIRKKN SSSRGREPSQ TYDHIIAERK 120 RREQLSRQFV ALSGIVPGLK KTDKTSVLGD TINYLKHLQE KVKKLEEKTT KKSMESVVLA 180 KKSQLPFEDE DKGSSHEQSF PHIEAKVFDK NILIRIQCLK HKGVLLNALS SIMKFNLAVT 240 KINATPFGRW ALEITIIAQM ETEFSLTIQD LIESLQSALK KNR |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 117 | 122 | ERKRRE |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_027109522.1 | 2e-84 | transcription factor bHLH18-like | ||||
| TrEMBL | A0A068V9K6 | 1e-79 | A0A068V9K6_COFCA; Uncharacterized protein | ||||
| STRING | Aquca_010_00012.1 | 2e-62 | (Aquilegia coerulea) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA1760 | 24 | 61 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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