PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10685_iso_6

Common Name

myc1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 271aa MW: 29694.9 Da PI: 5.677

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10685_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	9e-11	154	201	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq cra_locus_10685_iso_6_len_1413_ver_3 154 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 201 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.26E-10	148	205	No hit	No description
SuperFamily	SSF47459	9.55E-18	148	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-18	150	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	150	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-8	154	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	156	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048446	Biological Process	petal morphogenesis
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MDQQASYNLA GDTVPYNLAE IWPFPMNSAT AATSFHNNNN AANSLAAAAA AGISMNMNVN 60 LSVNRDHDPM VMDQAPNLNG GVRRRREDDD SAKGVSTSND ANAMNEGDNK RLKTGGSNEN 120 HESKAEGEET AKPAEPPKQD YIHVRARRGQ ATDSHSLAER ARREKISERM KILQDLVPGC 180 NKVIGKALVL DEIINYIQSL QRQVEFLSMK LEAVNSRLSP GIEGFPSKEF GQPPYDPSGM 240 AFGSQSSREY GRDTSPEWLH MQIGGGFERT T

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269\|PubMed:23715469}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00207	DAP	Transfer from AT1G59640	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027153368.1	1e-138	transcription factor BHLH094 isoform X1
Swissprot	Q69WS3	3e-77	BH094_ORYSJ; Transcription factor BHLH094
TrEMBL	Q71SQ1	0.0	Q71SQ1_CATRO; MYC1
STRING	XP_009776012.1	1e-109	(Nicotiana sylvestris)

Publications ? help Back to Top
Chatel G, et al. CrMYC1, a Catharanthus roseus elicitor- and jasmonate-responsive bHLH transcription factor that binds the G-box element of the strictosidine synthase gene promoter. J. Exp. Bot., 2003. 54(392): p. 2587-8 [PMID:12966042]