PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_10685_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 203aa MW: 22309.8 Da PI: 6.6844 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.2 | 5.3e-07 | 154 | 180 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + cra_locus_10685_iso_5_len_1925_ver_3 154 SHSLAERARREKISERMKILQDLVPGC 180 8************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.97E-9 | 148 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.68E-5 | 148 | 187 | No hit | No description |
PROSITE profile | PS50888 | 11.071 | 150 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-4 | 154 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-8 | 154 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048446 | Biological Process | petal morphogenesis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MDQQASYNLA GDTVPYNLAE IWPFPMNSAT AATSFHNNNN AANSLAAAAA AGISMNMNVN 60 LSVNRDHDPM VMDQAPNLNG GVRRRREDDD SAKGVSTSND ANAMNEGDNK RLKTGGSNEN 120 HESKAEGEET AKPAEPPKQD YIHVRARRGQ ATDSHSLAER ARREKISERM KILQDLVPGC 180 NKVSVLTYLY TLTNSYFLML LRL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00207 | DAP | Transfer from AT1G59640 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027153368.1 | 8e-77 | transcription factor BHLH094 isoform X1 | ||||
Refseq | XP_027153369.1 | 7e-77 | transcription factor BHLH089 isoform X2 | ||||
TrEMBL | Q71SQ1 | 1e-121 | Q71SQ1_CATRO; MYC1 | ||||
STRING | XP_009776012.1 | 8e-57 | (Nicotiana sylvestris) |