PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_10685_iso_2 | ||||||||
Common Name | myc1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 216aa MW: 23579.2 Da PI: 6.2448 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.8 | 6.2e-11 | 154 | 201 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq cra_locus_10685_iso_2_len_936_ver_3 154 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 201 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-16 | 148 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.05E-10 | 148 | 205 | No hit | No description |
PROSITE profile | PS50888 | 15.828 | 150 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-16 | 150 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-8 | 154 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-11 | 156 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048446 | Biological Process | petal morphogenesis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MDQQASYNLA GDTVPYNLAE IWPFPMNSAT AATSFHNNNN AANSLAAAAA AGISMNMNVN 60 LSVNRDHDPM VMDQAPNLNG GVRRRREDDD SAKGVSTSND ANAMNEGDNK RLKTGGSNEN 120 HESKAEGEET AKPAEPPKQD YIHVRARRGQ ATDSHSLAER ARREKISERM KILQDLVPGC 180 NKVIGKALVL DEIINYIQSL QRQVEVCPQS LCVHAL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00207 | DAP | Transfer from AT1G59640 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027153368.1 | 1e-92 | transcription factor BHLH094 isoform X1 | ||||
Refseq | XP_027153369.1 | 1e-92 | transcription factor BHLH089 isoform X2 | ||||
Swissprot | Q0JXE7 | 4e-55 | BPE_ARATH; Transcription factor BPE | ||||
TrEMBL | Q71SQ1 | 1e-137 | Q71SQ1_CATRO; MYC1 | ||||
STRING | XP_009776012.1 | 6e-73 | (Nicotiana sylvestris) |
Publications ? help Back to Top | |||
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