PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_10685_iso_1 | ||||||||
Common Name | myc1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 205aa MW: 22439.9 Da PI: 6.9655 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.9 | 5.6e-11 | 88 | 135 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq cra_locus_10685_iso_1_len_1013_ver_3 88 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 135 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.27E-10 | 82 | 139 | No hit | No description |
SuperFamily | SSF47459 | 5.5E-18 | 82 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-18 | 84 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.828 | 84 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-8 | 88 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 90 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048446 | Biological Process | petal morphogenesis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
SLAAAAAAAP NLNGGVRRRR EDDDSAKGVS TSNDANAMNE GDNKRLKTGG SNENHESKAE 60 GEETAKPAEP PKQDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL VPGCNKVIGK 120 ALVLDEIINY IQSLQRQVEF LSMKLEAVNS RLSPGIEGFP SKEFGQPPYD PSGMAFGSQS 180 SREYGRDTSP EWLHMQIGGG FERTT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00207 | DAP | Transfer from AT1G59640 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027153368.1 | 1e-105 | transcription factor BHLH094 isoform X1 | ||||
Swissprot | Q69WS3 | 8e-79 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | Q71SQ1 | 1e-144 | Q71SQ1_CATRO; MYC1 | ||||
STRING | XP_002520177.1 | 3e-99 | (Ricinus communis) |
Publications ? help Back to Top | |||
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