PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10676_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRF
Protein Properties Length: 593aa    MW: 63319.2 Da    PI: 8.579
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10676_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.18.8e-25213257145
                                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                           d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  cra_locus_10676_iso_3_len_2032_ver_3 213 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 257
                                           79****************************************985 PP

2QLQ62.11.4e-21143179137
                                   QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                           ++FT++Q+++L++Q+l+yK+L+an+P+P +Ll +++k
  cra_locus_10676_iso_3_len_2032_ver_3 143 GPFTPSQWMELEHQALIYKHLMANVPIPTHLLIPLKK 179
                                           59*******************************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.3E-13143179IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.962144179IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.4E-16144177IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.954213257IPR014977WRC domain
PfamPF088793.9E-21214256IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MDLGIITTEE GGGGNGPDPF GIDIPKSQGG SGLLKLKRSG SSLQEESWRA SKVPKANEFG  60
IFSQAQSPSL LRSGSMIPTS NGQTMISFSS QSQAPLFPDE DAAKTSAIPF FLSPQESLSS  120
RASVYAAEKT TEGIRGPFAR FRGPFTPSQW MELEHQALIY KHLMANVPIP THLLIPLKKA  180
FNPYAFSSFS SGSYSSSSLG WGSFHLGFAG STDPEPGRCR RTDGKKWRCS RDAVPDQKYC  240
ERHINRGRHR SRKPVEGQTG HAVSGTTASK VAPNASSSSA SVMSSSSNAT NNCLGSAQHQ  300
FKNLQPGAAN TSTEHLVGRA QDLQSLSVLG DAMNMKSKDT SFSTQKSNAL LGGSNLPEFG  360
LVSPDSLLNP SQRNSRMNSR NSHSFPSFND QEEQGQHPLR HFIDNWPKDQ SDRASVSWPE  420
ELKSDWTQLS MSIPMSSSDF SSSSNSPPQE KPTLSPLRLA REIDPIQMGL SVNNNNLNLG  480
EPNQRQSTWL PVSWGNSVGG PLGEVLNSTS YNVGASKDSS AAAALNLMMD GSSPQMGCSP  540
TGVLQKTTFV SLSNSSSGSS PRTDDKKGSK GAASLCDDLL GSNLANSAPI SSV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027076603.10.0growth-regulating factor 1-like isoform X1
TrEMBLA0A068U2640.0A0A068U264_COFCA; Uncharacterized protein
STRINGXP_009589483.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357