PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10674_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB
Protein Properties Length: 337aa    MW: 38700.7 Da    PI: 5.9233
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10674_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-172471148
                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                          rg W++eEde+l++ ++ +G g+W+++++  g+ R++k+c++rw +yl
  cra_locus_10674_iso_1_len_1008_ver_3 24 RGLWSPEEDEKLIRHITTHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 71
                                          788*******************************************97 PP
2Myb_DNA-binding52.89e-1777120146
                                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                           rg++T++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  cra_locus_10674_iso_1_len_1008_ver_3  77 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 120
                                           89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-271574IPR009057Homeodomain-like
PROSITE profilePS5129418.0191971IPR017930Myb domain
SuperFamilySSF466895.08E-2921118IPR009057Homeodomain-like
SMARTSM007172.6E-132373IPR001005SANT/Myb domain
PfamPF002492.0E-152471IPR001005SANT/Myb domain
CDDcd001675.83E-112771No hitNo description
PROSITE profilePS5129426.22872126IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2575127IPR009057Homeodomain-like
SMARTSM007179.2E-1776124IPR001005SANT/Myb domain
PfamPF002491.9E-1577120IPR001005SANT/Myb domain
CDDcd001673.31E-1179122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
XSGENIKERE IMGHHCCSKQ KVKRGLWSPE EDEKLIRHIT THGHGCWSSV PKLAGLQRCG  60
KSCRLRWINY LRPDLKRGSF TEQEERTIID VHRILGNRWA QIAKHLPGRT DNEVKNFWNS  120
VIKKKLISQG LDPNTHNLLS TQQITKNKNY QKDNNHSSSV FTVDTSPCKE ILPNLSNTFE  180
FQNPNLTQNQ NHLVEFSSCS NSILSSGFGI LNENCMWASN INNVFEQSLM MKSSGAVQED  240
QMQKEEQGVL LEDQQMMKRK LVGEDIINDD QEQLIYRVND DEQLLNNVCD HQSTDINNAM  300
FDDSSNIDFD FMDSALVPPA IYCNMNSIDH IAWDCXX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30241267108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087711.11e-127myb-related protein 330-like
RefseqXP_027183792.11e-127transcription factor MYB14-like
SwissprotQ8VZQ21e-70MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A068U7D61e-118A0A068U7D6_COFCA; Uncharacterized protein
STRINGXP_009622248.11e-111(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]