PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_10655_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 200aa MW: 22713.3 Da PI: 7.5949 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.9 | 6.3e-10 | 7 | 50 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ Ed+ + +a +++ + +W +Ia+ ++ g+t+++++ ++ cra_locus_10655_iso_3_len_1140_ver_3 7 TWTKFEDKMFEQALVMYPDDvpdRWQKIAKSLP-GKTPEDVRVHY 50 7*****************99*************.*********99 PP | |||||||
2 | Myb_DNA-binding | 41.4 | 3.3e-13 | 106 | 150 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r +Rt+ q+ s+ qky cra_locus_10655_iso_3_len_1140_ver_3 106 PWTEEEHRLFLIGLSRYGKGDWRSISRNCVVTRTPTQVASHAQKY 150 8***************************999*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.486 | 1 | 58 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-9 | 4 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-6 | 7 | 54 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.4E-9 | 7 | 51 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.21E-9 | 7 | 54 | No hit | No description |
SuperFamily | SSF46689 | 1.94E-12 | 7 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.051 | 99 | 155 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.97E-17 | 101 | 155 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-16 | 102 | 154 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.6E-11 | 103 | 149 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-9 | 103 | 153 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-11 | 106 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-9 | 106 | 150 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MSDSGVTWTK FEDKMFEQAL VMYPDDVPDR WQKIAKSLPG KTPEDVRVHY EALVHDVLEI 60 DSGRVELPSY IDDDSCGWDS DSKSNQISFG SSGKAKHDVE RKKGTPWTEE EHRLFLIGLS 120 RYGKGDWRSI SRNCVVTRTP TQVASHAQKY YLRQSAVKKE RKRSSIHDIT TAVECKTVPP 180 PRNFGPDGGG YQDFNFPGSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-18 | 4 | 70 | 7 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019263059.1 | 1e-101 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_027104730.1 | 1e-101 | transcription factor DIVARICATA-like | ||||
Refseq | XP_027111292.1 | 1e-101 | transcription factor DIVARICATA | ||||
Refseq | XP_027161713.1 | 1e-101 | transcription factor DIVARICATA | ||||
Swissprot | Q9FNN6 | 4e-57 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A314L922 | 1e-100 | A0A314L922_NICAT; Transcription factor myb1r1 | ||||
STRING | XP_009796939.1 | 1e-100 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4547 | 22 | 41 |
Publications ? help Back to Top | |||
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