PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_10511_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 419aa MW: 45659.5 Da PI: 8.4184 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.5 | 8.1e-12 | 47 | 72 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C+yG++C+F+H+p cra_locus_10511_iso_1_len_2964_ver_3 47 GEPDCSYYIRTGLCRYGATCRFNHPP 72 6899********************97 PP | |||||||
2 | zf-CCCH | 38.9 | 1.4e-12 | 93 | 117 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ cra_locus_10511_iso_1_len_2964_ver_3 93 QPECQYYLKTGTCKFGATCKFHHPR 117 799********************96 PP | |||||||
3 | zf-CCCH | 35.3 | 1.9e-11 | 129 | 151 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +++rtG+Ck+G++CkF+H++ cra_locus_10511_iso_1_len_2964_ver_3 129 DCAYYLRTGHCKFGSTCKFHHPQ 151 6********************97 PP | |||||||
4 | zf-CCCH | 38.7 | 1.6e-12 | 279 | 305 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ cra_locus_10511_iso_1_len_2964_ver_3 279 PGQPECQFYMKTGDCKFGAVCKFHHPR 305 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.2 | 5.5e-13 | 325 | 351 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ cra_locus_10511_iso_1_len_2964_ver_3 325 PGEPLCIFYSRYGICKFGPSCKFDHPM 351 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.239 | 45 | 73 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.0E-6 | 45 | 72 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-8 | 47 | 72 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 50 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 51 | 71 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 90 | 118 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-6 | 90 | 117 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-10 | 93 | 117 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 94 | 119 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-5 | 96 | 117 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.047 | 124 | 152 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-4 | 125 | 151 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-9 | 129 | 151 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 129 | 152 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 130 | 150 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.502 | 278 | 306 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-6 | 278 | 305 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-9 | 280 | 305 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 282 | 307 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 284 | 306 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 324 | 352 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 324 | 351 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-10 | 326 | 351 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 327 | 351 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-4 | 329 | 349 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 419 aa Download sequence Send to blast |
MDFDAGIPIS RASVTEGPSS LDQDALWQMN LRSRETIESG GYPVREGEPD CSYYIRTGLC 60 RYGATCRFNH PPNRKLAIAT ARMRGEYPER VGQPECQYYL KTGTCKFGAT CKFHHPRDKA 120 GIAGKNEIDC AYYLRTGHCK FGSTCKFHHP QPANMMVSLR GSAVYPPVQS PTNAGQLSYP 180 RASFIPSPRW QGPSSYAPML LPQGMVSVPG WSAYSGQVAS GSSSENLQQT SGSTQTLGTS 240 RQSEAANFES QGTHSSYPSA SVPMGYYALQ REAVFPERPG QPECQFYMKT GDCKFGAVCK 300 FHHPRERVIP APDCVLSSIG LPLRPGEPLC IFYSRYGICK FGPSCKFDHP MGVFTYNLPS 360 SSTEVPAVRR LLASSSSGSA TLTLASEGLI EASSSKARRL PLSEARKMPS GDASIDPEE |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027087150.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A068U9F4 | 0.0 | A0A068U9F4_COFCA; Uncharacterized protein | ||||
STRING | XP_004302155.1 | 0.0 | (Fragaria vesca) |