PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10503_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 636aa    MW: 70574.9 Da    PI: 6.7214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10503_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.7e-11441483754
                                           HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                                   HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                           ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+++L
  cra_locus_10503_iso_4_len_2151_ver_3 441 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILADAIEYLREL 483
                                           79*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.783434483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-16437505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-8440483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-12440489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-12441488No hitNo description
Gene3DG3DSA:4.10.280.108.5E-15441497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550214.35E-5550620No hitNo description
PROSITE profilePS5167110.088553629IPR002912ACT domain
CDDcd048734.07E-8554617No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
AETKPKRRPE PPKSKQKQQQ GSDYRAKLFS ETTAASTNLI SCILHRXFVQ TDWINPKSAA  60
YSRAFSLTKF QNRLTMQSAS CDPMLMQEQQ QQREIQESPA DGRVESAVAK AFVWTRNNGE  120
GFVKRELDPF STFKPLHESD SAWCVNNYDV NVPSSLHSDH FQSPQTNCEL ITRGHGLTLT  180
ESSPLHPMDS SSDSIYAAES VQSPFPPKPS LSSLLNAIYN YPFDTSLDVV SDSTGFLAQL  240
HEGQTLVSPV FPGVNGLNSQ ARPGDSDLGY VSQNSGPLFL PWADDGDFNP FCLDGYGNPL  300
FLNRAKAPRP LEVVSPLAAS NSTNTLFQRR LASHSNSGEN NGKFRNPIEE SFHVPVGLNL  360
DKGKGLAEEE RQLLKDKQKD AVHEMEELKS SGFDSNSEEK IENYFVGENA SHGLDISNAN  420
SSVINWDEKG KKGRLPAKNL MAERRRRKKL NDRLYMLRSV VPKISKMDRA SILADAIEYL  480
RELLNRIKLL NDELQSMPVT PPMPAHTSPL TQTSTGPARP YPLKEEACKI SPPNAINQPP  540
MVHVEVREEN AFNIHMFCSR RPGLLLSTTR ALDSLGLDIQ QAVISCVNGF ALDIFRAENS  600
SGGMELHQDQ IKTTLLDTAA FHGLLXPSSK PKGLDM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1442449ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180061.11e-123PREDICTED: transcription factor SCREAM2-like
TrEMBLA0A2U9IXY50.0A0A2U9IXY5_CATRO; Inducer of CBF expression 1b
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2208822