PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10503_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 479aa MW: 53327.4 Da PI: 7.3434

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10503_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.2	1e-06	441	463	7	29
HHHHHHHHHHHHHHHHHHCTSCC CS HLH 7 erErrRRdriNsafeeLrellPk 29 ++ErrRR+++N+++ Lr+++Pk cra_locus_10503_iso_3_len_1662_ver_3 441 MAERRRRKKLNDRLYMLRSVVPK 463 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-7	432	471	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.458	434	479	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.10E-6	441	470	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.2E-6	441	464	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0016597	Molecular Function	amino acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
AETKPKRRPE PPKSKQKQQQ GSDYRAKLFS ETTAASTNLI SCILHRXFVQ TDWINPKSAA 60 YSRAFSLTKF QNRLTMQSAS CDPMLMQEQQ QQREIQESPA DGRVESAVAK AFVWTRNNGE 120 GFVKRELDPF STFKPLHESD SAWCVNNYDV NVPSSLHSDH FQSPQTNCEL ITRGHGLTLT 180 ESSPLHPMDS SSDSIYAAES VQSPFPPKPS LSSLLNAIYN YPFDTSLDVV SDSTGFLAQL 240 HEGQTLVSPV FPGVNGLNSQ ARPGDSDLGY VSQNSGPLFL PWADDGDFNP FCLDGYGNPL 300 FLNRAKAPRP LEVVSPLAAS NSTNTLFQRR LASHSNSGEN NGKFRNPIEE SFHVPVGLNL 360 DKGKGLAEEE RQLLKDKQKD AVHEMEELKS SGFDSNSEEK IENYFVGENA SHGLDISNAN 420 SSVINWDEKG KKGRLPAKNL MAERRRRKKL NDRLYMLRSV VPKISKVIII SSGLIFLLR

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

AETKPKRRPE PPKSKQKQQQ GSDYRAKLFS ETTAASTNLI SCILHRXFVQ TDWINPKSAA  60
YSRAFSLTKF QNRLTMQSAS CDPMLMQEQQ QQREIQESPA DGRVESAVAK AFVWTRNNGE  120
GFVKRELDPF STFKPLHESD SAWCVNNYDV NVPSSLHSDH FQSPQTNCEL ITRGHGLTLT  180
ESSPLHPMDS SSDSIYAAES VQSPFPPKPS LSSLLNAIYN YPFDTSLDVV SDSTGFLAQL  240
HEGQTLVSPV FPGVNGLNSQ ARPGDSDLGY VSQNSGPLFL PWADDGDFNP FCLDGYGNPL  300
FLNRAKAPRP LEVVSPLAAS NSTNTLFQRR LASHSNSGEN NGKFRNPIEE SFHVPVGLNL  360
DKGKGLAEEE RQLLKDKQKD AVHEMEELKS SGFDSNSEEK IENYFVGENA SHGLDISNAN  420
SSVINWDEKG KKGRLPAKNL MAERRRRKKL NDRLYMLRSV VPKISKVIII SSGLIFLLR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	442	449	ERRRRKKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2U9IXY5	0.0	A0A2U9IXY5_CATRO; Inducer of CBF expression 1b