PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_10464_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 538aa MW: 60435.5 Da PI: 5.9036 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 448.3 | 5e-137 | 168 | 538 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn 73 l+++L++cA+a+s++d aq l+++l++++s +g+p+qRl ay++e+L a+l+ s+s++yk+l+++e + cra_locus_10464_iso_1_len_1949_ver_3 168 LKHVLVACAKAISENDYLTAQLLMTELRQMVSVSGEPIQRLGAYMLEGLVAKLTASGSSIYKSLRCKEPA--- 237 689******************************************************************9... PP GRAS 74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTg 146 s e l+++++++ev+P++kf+++ aN aI ea++ e+rvHi+Df+i qG QW++L+qa+a+Rp+gpp++RiTg cra_locus_10464_iso_1_len_1949_ver_3 238 SFELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDENRVHIVDFQIAQGSQWVTLIQAFAARPGGPPHIRITG 310 9************************************************************************ PP GRAS 147 vgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldes 217 +++++s + l+ +g+rL+++Ae+++vpfef++ ++ + +++++e+L ++pgEalaVn++++lh+++des cra_locus_10464_iso_1_len_1949_ver_3 311 IDDSTSAyaRGGGLNIVGQRLSRLAESFKVPFEFHA-ATISGSEIQPENLGIQPGEALAVNFAFMLHHMPDES 382 ***998899999************************.7889******************************** PP GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 vs+e++rd++L++v++l+Pkvv++veqe+++n++sF+ rfle+++yy a+f+s++++lpre++eri+vE+++l cra_locus_10464_iso_1_len_1949_ver_3 383 VSTENHRDRILRMVRGLNPKVVTLVEQESNTNTSSFFPRFLETFDYYKAMFESIDVTLPREHKERINVEQHCL 455 ************************************************************************* PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 ++++vn++acegaer+erhe l+kW+ r+++aGF+p+pls+ ++ ++k+ll+++ + yr+ee++++l+lgW+ cra_locus_10464_iso_1_len_1949_ver_3 456 AKDLVNIIACEGAERVERHELLGKWKLRFRMAGFSPYPLSSLVNGTIKTLLENYCD-KYRLEERDDALYLGWM 527 ******************************************************95.5*************** PP GRAS 364 drpLvsvSaWr 374 +r Lv+ +aW+ cra_locus_10464_iso_1_len_1949_ver_3 528 NRDLVASCAWK 538 **********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.515 | 142 | 519 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-134 | 168 | 538 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 538 aa Download sequence Send to blast |
MSLSNALCLN LPVQKVEAYF LQQLPSLEPH LSYTHSNNNG NSYPIQISHD RYCTLESSSV 60 TANHNLYNSP STASFSPNGS PMSQQEYQSH ALDQVRSPDT NYGSPVSGSC VTEEVHDLRH 120 KLKELETAML GPDSDIFEVC EDTFSHGITS PEINIWRQMI EVIPRGDLKH VLVACAKAIS 180 ENDYLTAQLL MTELRQMVSV SGEPIQRLGA YMLEGLVAKL TASGSSIYKS LRCKEPASFE 240 LLSYMHILYE VCPYFKFGYM SANGAIAEAM KDENRVHIVD FQIAQGSQWV TLIQAFAARP 300 GGPPHIRITG IDDSTSAYAR GGGLNIVGQR LSRLAESFKV PFEFHAATIS GSEIQPENLG 360 IQPGEALAVN FAFMLHHMPD ESVSTENHRD RILRMVRGLN PKVVTLVEQE SNTNTSSFFP 420 RFLETFDYYK AMFESIDVTL PREHKERINV EQHCLAKDLV NIIACEGAER VERHELLGKW 480 KLRFRMAGFS PYPLSSLVNG TIKTLLENYC DKYRLEERDD ALYLGWMNRD LVASCAWK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-59 | 172 | 538 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027061587.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027061588.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027061589.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027061590.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027064389.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027064390.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027064391.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027064392.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027170795.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027170796.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027170797.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027170798.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A068VEA1 | 0.0 | A0A068VEA1_COFCA; Uncharacterized protein | ||||
STRING | XP_009590821.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Publications ? help Back to Top | |||
---|---|---|---|
|